Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2459 ATGTCAACCTCAAGAACCTCTGATGCTTCCCTCAAAGGATATGAGTCCAACCAAACCCAAATGAATCTGTCCCTCCTTCAACGTAACATGTCTCCTTCTGGCGAGAGAAGAGGCCGAGGAAAACAAGCAGAACCTGGAAGGTTTCTCGGAGTAAGAAGGCGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAGAACCAACTTCATATATTCCAAAGACACCAATACCAACATTTTCCACAATGCTCTCACTCCTATGAATACTCAACCTCTCTTGCCACCTTCACATAACACTCACAACACACAACCAACCAATCAAAGTGGCCTATCTCACCACCTTGGTGCTATCTCTTCCCACATTGAAAACCCTTCTGACATGAGTGCATATGGGTCACCTCAGGATGATAATTTCTTCTTCTCCAATGATTCTAACTCGGGCTATCTTGAATGCATAGTTCAGGATAACTGCTTCAGGAAGAGCAATGCCAGTGCTTCAAGTCATGACCTTACGATTGGCCACGTTAACTCAAACTCCATGCATGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTGAACATGCAAACAACAGTGACTTCAAACTATGCAGATATTTCTTACCCTAGTCAAGGATTATGGAACAATCAGCAATCATGGGATTGCAGTTCCAATGAACTAGCAGCTATGTTTAAAAATCCATCAAGGGCTGAGGAAGGGTACATGTGCATGAATGCATTAATGTATCCCTTCACTGATAGTTCAAGCTACGGTTTTATGACTCAGGCTGAGGCTGTTTCTTCAACTACCTTTTCTCCATCACTTCCTCCCTTTGGGGATGCTGATTTGGGATACTCACCCTTTTGA 969 0.4376 MSTSRTSDASLKGYESNQTQMNLSLLQRNMSPSGERRGRGKQAEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAQEAALAYDRAALSMKGCQARTNFIYSKDTNTNIFHNALTPMNTQPLLPPSHNTHNTQPTNQSGLSHHLGAISSHIENPSDMSAYGSPQDDNFFFSNDSNSGYLECIVQDNCFRKSNASASSHDLTIGHVNSNSMHVQPHFDTTQEALNMQTTVTSNYADISYPSQGLWNNQQSWDCSSNELAAMFKNPSRAEEGYMCMNALMYPFTDSSSYGFMTQAEAVSSTTFSPSLPPFGDADLGYSPF* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2459 322 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 322 - -
Gso11g2459 322 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 322 - -
Gso11g2459 322 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Gso11g2459 322 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Gso11g2459 322 MobiDBLite consensus disorder prediction 1 23 - -
Gso11g2459 322 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2459 Gso-Chr11 40597159 40598542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2459 1 193 AP2-EREBP Transcription Factor Family AT5G18560 47.154 1.47e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso11g2459 AP2 4.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2459 - - gmx:102664746 659.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0810 15 7448978 7450056 Gso11g2459 11 40597159 40598542 GST
Gso7g2115 7 45015375 45016814 Gso11g2459 11 40597159 40598542 PCT
Gso17g0190 17 1768217 1769748 Gso11g2459 11 40597159 40598542 PCT
Gso11g2459 11 40597159 40598542 Gso7g2115 7 45015375 45016814 PCT
Gso11g2459 11 40597159 40598542 Gso17g0190 17 1768217 1769748 PCT