Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2452 ATGGCGAGACCTTCCAAGCCACACTCATCTTCCGAGGAAGCGCTCTCCAATGCTTCCAGTTCGTCCGAGGAAGAGGAGCAAGTCAACGAGCAGATCAATGAAGAGGAAGACGAGGAGGAGCTCGAGGCGGTGGCGCGCCCCGCCAGTTCCGATGACGATGAAGTCGCCGGCGACAATCCGCCGGACTCTGATGAAGATCCCGCGGCCGATGATGATCAGGATGGGGATAATGTTAATCCCGAAATTAGCAAGCGAGAGAAGACTCGATTAAAAGAAATGCAGAAAATGAAGAAACAGAAGATTCTGGAGATACTGGATGCACAGAATGCGGCCATTGACGCTGACATGAACAATAGAGGAAAGGGGCGTCTGAAGTATCTCTTGCAGCAGACTGAGTTGTTTGCTCATTTTGCAAAAGGGGATCAATCTTCTTCTCAAAAGAAGTCAAGGGGAAGGGGTCGCCATGCATCCAATTTCACTGAGGAAGAAGAAGATGAAGAATACCTAAAAGGAGAAGAAGATGGTCTAGCAAACACACGTCTGGTGACACAACCATCATGTATCCAAGGGAAAATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGAATAAATGGAATTCTGGCTGATGAAATGGGGCTTGGTAAAACATTGCAAACTATATCCTTATTAGGTTATCTGCACGAGTTCAGAGGAATCAAAGGTCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAGATTCGGCGCTTTTGTCCTATTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGATGAAAGGAGACATATCAGAGATGAATTGTTGGTTGCCGGGAAGTTTGATGTTTGTGTCACAAGTTTTGAAATGGCAATCAAGGAGAAGTCTGCTTTGCGTCGATTTAGTTGGCGCTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAGAATTCCTTGCTGTCCAAAACAATGAGGCTCTACAGTACAAACTATCGTCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTGCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTCCGCCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCGAAAAAGGAAACTATTCTTAAGGTAGGCATGTCCCAAATGCAGAAACAGTATTATAGAGCACTACTTCAGAAGGATCTTGAGGTTGTAAATGCTGGTGGTGAACGGAAGCGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCCTTCACTACAGGAGATCATCTAATTGAAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGCGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTACTAGACATACTCGAAGATTATTTAGTGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAACCAGGAAGTGAGAAATTTGTCTTCTTGTTATCAACTCGTGCTGGAGGTCTTGGTATTAATCTTGCTACTGCTGATGTTGTCATTCTGTACGATAGTGACTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGTTTTTGTACTGAGTATACAATAGAAGAGAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAGCAAGGGCGATTGGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCCGAGCTTGATGCCAAAATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAATTATATGATTTTGATGATGAGAAGGATGAAAACAGATTTGATATAAAAAAAATTGTGAGCGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAACGCAATTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCCTACCAAACCAAAAGAGCCCCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAAAGATTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACACACCAGAAGAATCAGATAAAGGATTCAATAGATGTTGATGAACCGGAAGAGGTGGGAGATCCATTGACTGCTGAAGAGTTGGAAGAAAAGGAGCGCTTGCTAGAAGAGGGATTTTCTTCATGGACCCGGAGGGATTTTAATACTTTCATTAGGGCCTGCGAAAAATATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGAAGTTGAAAGATATGCAAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAGGCTATTGGAAAGAAGTTGGACCGCTACAAGAATCCGTGGCTAGAGTTGAAGATACAGTATGGGCAAAACAAAGGGAAGTTGTACAACGAAGAATGTGACAGATTCATGATATGCATGGTACACAAACTTGGCTATGGGAACTGGGATGAGTTAAAGGCAGCATTTCGAACATCACCCTTGTTTCGATTTGATTGGTTTGTCAAATCTCGCACAACTCAAGAACTGGCTAGGAGGTGTGACACCCTCATTCGACTGGTAGAAAAGGAAAACCAAGAATACGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAGCATGACCCCATCAAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGGGGAAAAGAAGAAAATAA 3204 0.4235 MARPSKPHSSSEEALSNASSSSEEEEQVNEQINEEEDEEELEAVARPASSDDDEVAGDNPPDSDEDPAADDDQDGDNVNPEISKREKTRLKEMQKMKKQKILEILDAQNAAIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSSQKKSRGRGRHASNFTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPILRAIKFLGNPDERRHIRDELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLIENAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLVFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWTRRDFNTFIRACEKYGRNDIKGIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKSMTPSKRALARQTESPSSLKKRKQLTMDDYASTGKRRK* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2452 1067 Pfam Helicase conserved C-terminal domain 495 607 IPR001650 -
Gso11g2452 1067 Gene3D - 193 408 IPR038718 -
Gso11g2452 1067 CDD SF2_C_SNF 493 618 - -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 55 76 - -
Gso11g2452 1067 SMART helicmild6 523 607 IPR001650 -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 138 168 - -
Gso11g2452 1067 Pfam SNF2-related domain 205 472 IPR000330 GO:0005524|GO:0140658
Gso11g2452 1067 MobiDBLite consensus disorder prediction 9 26 - -
Gso11g2452 1067 Coils Coil 15 42 - -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 1045 1067 - -
Gso11g2452 1067 SMART ultradead3 188 380 IPR014001 -
Gso11g2452 1067 Gene3D - 843 897 - -
Gso11g2452 1067 SUPERFAMILY Homeodomain-like 846 896 IPR009057 -
Gso11g2452 1067 CDD DEXHc_SMARCA1_SMARCA5 189 409 IPR044754 GO:0005524
Gso11g2452 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 369 IPR014001 -
Gso11g2452 1067 Gene3D ISWI, HAND domain 744 842 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gso11g2452 1067 MobiDBLite consensus disorder prediction 1015 1067 - -
Gso11g2452 1067 SUPERFAMILY Homeodomain-like 898 1020 IPR009057 -
Gso11g2452 1067 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 755 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gso11g2452 1067 CDD SANT 846 890 IPR001005 -
Gso11g2452 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 407 IPR027417 -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 143 161 - -
Gso11g2452 1067 Gene3D iswi atpase 898 930 - -
Gso11g2452 1067 SMART sant 843 892 IPR001005 -
Gso11g2452 1067 SMART sant 945 1006 IPR001005 -
Gso11g2452 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 690 IPR027417 -
Gso11g2452 1067 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 9 1067 - -
Gso11g2452 1067 Gene3D - 931 1034 - -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 1 88 - -
Gso11g2452 1067 Pfam SLIDE 900 1010 IPR015195 GO:0003677|GO:0005634|GO:0006338
Gso11g2452 1067 ProSiteProfiles SANT domain profile. 842 894 IPR017884 -
Gso11g2452 1067 PANTHER SNF2/RAD54 HELICASE FAMILY 9 1067 - -
Gso11g2452 1067 Gene3D - 413 705 IPR027417 -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 1015 1031 - -
Gso11g2452 1067 Coils Coil 90 110 - -
Gso11g2452 1067 MobiDBLite consensus disorder prediction 27 42 - -
Gso11g2452 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 497 648 IPR001650 -
Gso11g2452 1067 Coils Coil 1000 1027 - -
Gso11g2452 1067 Pfam HAND 756 838 IPR015194 GO:0003677|GO:0006338|GO:0031491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2452 Gso-Chr11 40522225 40530636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2452 213 634 RAD5 or RAD16-like Gene Family AT1G02670 26.931 1.18e-40 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g2452 SNF2_N 1.7e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2452 K11654 - gmx:100782649 2022.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0818 15 7522660 7530615 Gso11g2452 11 40522225 40530636 GST
Gso7g2122 7 45068691 45079775 Gso11g2452 11 40522225 40530636 PCT
Gso17g0185 17 1707832 1717209 Gso11g2452 11 40522225 40530636 PCT
Gso11g2452 11 40522225 40530636 Gso7g2122 7 45068691 45079775 PCT
Gso11g2452 11 40522225 40530636 Gso17g0185 17 1707832 1717209 PCT