Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2450 ATGGAAGGTTCTGTCCTTGAACGTCTTGATTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGAAGAAGATGCAGGATTAGAGCACCATGTTGCAATGAGCTCTACTTTTGCCGTCATTGTCATAACGAGGCAACGAGCATGCTGAGCAACCCTTTTGATCGGCACGAACTCGTCCGCCAGGACGTTCAACATGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAATTGTGGTGTCAGAATGGGAGAATATTTCTGCAATATCTGCAAATTCTTCGATGATGATACCGGGAAAAAACAGTTTCATTGTGATGATTGTGGGATTTGTAGACTTGGTGGTCGTGAGAATTATTCCCACTGCAGTAAGTGTGGGTGTTGCTACTCAAATACTCTGCGTGATAATCATTTGTGTGTGGAGAACTCCATGAGGCATCATTGTCCCATTTGTTATGAGTATCTTTTTGACTCATTGAAAGACATTGCTGTTATGAAATGTGGTCACACAATGCATAGTGAATGCTACCTAGAGATGCTAAAGCGTGACAAGTATTGTTGTCCCATATGCTCCAAGTCGGTGATGGACATGTCTAGGGCATGGAAGAGAATTGATGAAGAGATTGAAGCAACTGTCATGCCTGATGATTATCGGTACAGAAAGGTTTGGATACTATGTAATGACTGTAATGACACAACTGAAGTTTACTTCCACATTCTTGGACAAAAATGTGGTCACTGCAGTTCATATAATACTCGTGCTATAGCTCCTCCAGTTCTTTCTCAATGA 804 0.4204 MEGSVLERLDFGKMGYGCKHYRRRCRIRAPCCNELYFCRHCHNEATSMLSNPFDRHELVRQDVQHVVCSVCDTEQPVAQVCTNCGVRMGEYFCNICKFFDDDTGKKQFHCDDCGICRLGGRENYSHCSKCGCCYSNTLRDNHLCVENSMRHHCPICYEYLFDSLKDIAVMKCGHTMHSECYLEMLKRDKYCCPICSKSVMDMSRAWKRIDEEIEATVMPDDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCSSYNTRAIAPPVLSQ* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2450 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Gso11g2450 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Gso11g2450 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Gso11g2450 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Gso11g2450 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Gso11g2450 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Gso11g2450 267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MIEL1-LIKE ISOFORM X1 1 266 - -
Gso11g2450 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Gso11g2450 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 266 - -
Gso11g2450 267 Gene3D - 226 263 - -
Gso11g2450 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Gso11g2450 267 SMART ring_2 153 195 IPR001841 -
Gso11g2450 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Gso11g2450 267 SUPERFAMILY RING/U-box 152 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2450 Gso-Chr11 40501907 40506025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2450 10 263 C2H2 Transcription Factor Family AT3G18290 39.544 4.38e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2450 K10144 - gmx:100781566 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0821 15 7546751 7550505 Gso11g2450 11 40501907 40506025 GST
Gso7g2124 7 45086067 45089443 Gso11g2450 11 40501907 40506025 PCT
Gso17g0183 17 1696891 1700348 Gso11g2450 11 40501907 40506025 PCT
Gso11g2450 11 40501907 40506025 Gso7g2124 7 45086067 45089443 PCT
Gso11g2450 11 40501907 40506025 Gso17g0183 17 1696891 1700348 PCT