Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2442 ATGGGCCTAATCAGAAGCATGAGATCGCGGTCACAGCGTGTGGTGCAGGAGCAAGAAGCTGCTGAGTGTGTCGGTGTCGTCGTCGGCGACAGCATGCGACAGAGTTGTTGGGCCAACATGCCCCAAGAGCTTCTCCGAGAGGTCCTCCTCCGAATCGAGGCCTCCGAGGACACGTGGCCGCCGCGGAAGAGCGTCGTCTCCTGCGCCGGCGTCTGCCGCAGCTGGAGACATATCACCAAAGACATTGTCAAAACGCCCGAACTCTCCTCCAAGATCACCTTCCCCATTTCTGTTAAACAGCCTGGCCCAAGGGAGAATCTCCTACGGTGCTTTATAAAGCGCAACCGGTCCACCCAAACATACTATTTGTTTCTCAGTTTAACCAGTACGCTAGCTGAAGATGGGAAGTTCCTTCTTGCTGCACGCAAATGCAGACGTCCAACCTGCACAGATTATATCATCTCTCTTGACGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTTGGGAAACTAAGATCAAACTTTCTTGGAACAAAGTTCACAATCTATGATAGCCAGCTGCCTCATACAGGAGCAAAGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAGCAAGTTTCACCCAAGGTTCCTACAGGCAACTATCCAGTGGCCCATATTTCATATGAATTGAATGTGCTAGGCTCAAGGGGTCCTAGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCACTGCAATTGAACCTGGAGGTGTAGCACCTACACAGACTGAGTTTTCTCTTAACAACATAGACATGTTTCCTTCATTCCCCTTTTTTCGATCAAAATCAAATCGTGTGGAAAATTCCATGTCTGGACCATTGGTTGATCAAAAGGATGGGATGCTAGTGTTGAAAAACAAGGCCCCTAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTGAACTTTCATGGACGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTGGCTTCTGCAGAAAACGGACCTGCTGGACCAGAACACGATAAGATCATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCGGCATTTCAGGCATTTGCAATCTGCCTCAGCAGTTTTGATACCAAGATTGCTTGTGAATGA 1170 0.4812 MGLIRSMRSRSQRVVQEQEAAECVGVVVGDSMRQSCWANMPQELLREVLLRIEASEDTWPPRKSVVSCAGVCRSWRHITKDIVKTPELSSKITFPISVKQPGPRENLLRCFIKRNRSTQTYYLFLSLTSTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQLPHTGAKIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEPGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENSMSGPLVDQKDGMLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2442 389 Pfam F-box domain 37 84 IPR001810 GO:0005515
Gso11g2442 389 SUPERFAMILY F-box domain 32 81 IPR036047 GO:0005515
Gso11g2442 389 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Gso11g2442 389 Gene3D - 30 91 - -
Gso11g2442 389 Pfam Tub family 98 384 IPR000007 -
Gso11g2442 389 ProSitePatterns Tub family signature 2. 374 389 IPR018066 -
Gso11g2442 389 Gene3D Tubby Protein; Chain A 94 389 IPR025659 -
Gso11g2442 389 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 346 365 IPR000007 -
Gso11g2442 389 PRINTS Tubby superfamily signature 367 389 IPR000007 -
Gso11g2442 389 SUPERFAMILY Tubby C-terminal domain-like 86 389 IPR025659 -
Gso11g2442 389 PANTHER TUBBY-RELATED 4 389 - -
Gso11g2442 389 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2442 Gso-Chr11 40443175 40448488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2442 8 389 TUB Transcription Factor Family AT2G47900 72.468 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso11g2442 Tub 1.1e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2442 K19600 - gmx:100778346 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0829 15 7618704 7623935 Gso11g2442 11 40443175 40448488 GST
Gso7g2131 7 45128971 45131545 Gso11g2442 11 40443175 40448488 PCT
Gso17g0176 17 1654755 1657145 Gso11g2442 11 40443175 40448488 PCT
Gso11g2442 11 40443175 40448488 Gso7g2131 7 45128971 45131545 PCT
Gso11g2442 11 40443175 40448488 Gso17g0176 17 1654755 1657145 PCT