Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2430 ATGCAAGCGCCACAAGCATCATCACTCACTGATGAAGAAGCTCCTGAAATTTCCCATCAGGCTGTCCCCCAGCGAAACAAAGAAGTTTCAGACGGTGGACCAGGTGGTAGGCGCCCTGATATTTCACTTCAAGTTCCCCCTAGACCTACAGGGTTTGGCAGCACTAGTGGTGTAAGGGTTCTGGATCATTCTCAAAGTTTCGGTAAAGGGATTTCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGCAGATGGCGAAAGAAGTTCCCTCCTTAATTCAGACCCCAAGACAGCTGCAGACAGTCCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGTACTTCTCTTCCTGTTACACCTGCATCAAATCTGTCTCCTTCAGTTTCTACGCCCATTTCTGCAAGGGCATATAATGAACAGACTAAGCCTCATAAAGATGTTGATTGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCCGGGCGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTAGCGAACAGGAGCAACAAGAGTCAAATGATGATCAAATAACTCCTGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTATGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAGTTAAATGGTTTAGCACAAAAGGAGATAAGAAATGTGATGTATGTAGGCTAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACTAGCTCTGTTCAAAGAGAAAACAGACAGCTGCAAGGTCAGCAGAACCTACATCCAGAGTCAATAAGCGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCGATTATTATAGCATCACCATTTGCCTTTACGTTGGGCCTCCTAGCTTCCATTTTTGCAGTTATCCTACCAATTAAAGAGTATATATGGACATATGCTGCTCTTGAGTTTGCCCTTGTGGCTTTAACCGTGCATCTATTTTATACTATGTTGCATTTGACGGCCATATATGCCATACTACTTTCATCAGTTTTGGGTTTTGGAGTTGCTATGGGCATCAACTATGCGTATATCCAGTTTGTTACTTGGAGGCTTCAGGTTTCTCATGTTGATAACCCAGTATGA 1275 0.4259 MQAPQASSLTDEEAPEISHQAVPQRNKEVSDGGPGGRRPDISLQVPPRPTGFGSTSGVRVLDHSQSFGKGISSSRGFLRALSFKRKGNVADGERSSLLNSDPKTAADSPNMASISEIAWKRCTSLPVTPASNLSPSVSTPISARAYNEQTKPHKDVDCSKVSRSLSVPGRNVVIVRSVSFSTRSEQEQQESNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLVKWFSTKGDKKCDVCRLEVQNLPVTLLRVTSSVQRENRQLQGQQNLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIASPFAFTLGLLASIFAVILPIKEYIWTYAALEFALVALTVHLFYTMLHLTAIYAILLSSVLGFGVAMGINYAYIQFVTWRLQVSHVDNPV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2430 424 SUPERFAMILY RING/U-box 212 266 - -
Gso11g2430 424 MobiDBLite consensus disorder prediction 89 109 - -
Gso11g2430 424 ProSiteProfiles Zinc finger RING-type profile. 216 263 IPR001841 -
Gso11g2430 424 MobiDBLite consensus disorder prediction 1 58 - -
Gso11g2430 424 ProSiteProfiles Zinc finger RING-CH-type profile. 208 269 IPR011016 GO:0008270
Gso11g2430 424 SMART ringv_2 215 263 IPR011016 GO:0008270
Gso11g2430 424 PANTHER OS02G0165000 PROTEIN 1 424 - -
Gso11g2430 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 270 IPR013083 -
Gso11g2430 424 PANTHER ZINC FINGER PROTEIN 1 424 - -
Gso11g2430 424 Pfam RING-variant domain 216 262 IPR011016 GO:0008270
Gso11g2430 424 MobiDBLite consensus disorder prediction 93 109 - -
Gso11g2430 424 CDD RING_CH-C4HC3_MARCH 216 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2430 Gso-Chr11 40328750 40334609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2430 154 323 C3H Transcription Factor Family AT2G37950 28.108 5.45e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2430 - - gmx:100777100 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0838 15 7696854 7702073 Gso11g2430 11 40328750 40334609 GST