Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2428 ATGGAACCCCTGTCTCTCCCTCCTCTCCCAGTCATGGACGACGCCGAAGACCCTTCCTCCATTTGGGACTTCTCTTACCTCCTCGACTTCGACCTCGACGACCAAGATATTATTATTAATAACAACAACTCTCTCCCTCTTCCCTTAAACGACCACCCCGCTCCAAGCGAGATCCCTCAAAACGACAGGGTCCGAAAGCGCGACCCGAGGCTCACATGCTCCAACTTCCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTCGACGCCATACTCGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCCCGCACCGCGCGTGCATCTGCATCCGCTCGCTGCCAGGTCCCTGCCTGCGAGGTCGATATCTCAGAGCTGAAAGGGTATCACCGCCGACACAGGGTTTGCTTGCGCTGCGCTAATGCCGCCACCGTTATGCTCAACGGCGAGGCCAAGAGATACTGCCAACAGTGTGGAAAGTTTCACGTTTTGTCGGATTTCGACGAGGGTAAACGGAGCTGTAGAAGGAAGTTAGAGCGGCATAACACCAGAAGGAGAAGAAAGCCTACGGCGGATTCTGGAGGGGCTACTCATAGTGAACTACTTCAACCTGTTGCCGAAAACGAGGAAAACAATTATGATGTGGAAGCTGGAAAAGATTGTTCGAATTTGAGTACCGATATCAACGACGTTGGAGTGTCTCTGGATCTTGAAGATGAACCGGCTCCCATTCCGAGCTCGGCTCCTGAAGCCCAGAATATTAATAGTGATAGTGTTGTGTCTTTGGCTGTTTCTGGTGAAACGCGAGTGAATAGTGGGAACACTTCCAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTATTCGTCTATGTGCCAAACAGGTCGGATTTCTTTTAAGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGTGGATAAATTTACTGAAAGACCCTTTGGAGTATGTGCATGATATTGTTGCTCCTGGAAAGATGCTATCTGGAAGAGGCACTGCACTAGTTCATCTGAATGACATGATCTTCCGTGTTATGAAAGATGGAACTTCTGTGACGAATGTCAAGGTAAACATGCATGCACCGAAGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAGTTTCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTGCCTTCTCCACATAGCTGGACTGAAGACAACATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTTCCTCATACAGAGGAAAGTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAATCTGGTTTATCAAACTTTATTCCTGTACTCATTGGGGATAAAAAAATTTGTACTGAAATGAAGACACTGCAACAAAAATTAGATGTATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATCTGTAGCTCATGCGAAACTTTTGCACTTAGTCACACATCATCATCAGACTTACTTGTAGATATAGCATGGTTGCTTAAGGACACCACTTCAGAAAATTTTGACAGAGTGATGACAGCTTCACAAATTCAAAGATATTGCCATTTGTTGGACTTTCTGATATGCAATGATTCAACAATCATTTTGGGAAAAATATTACCAAATTTGATGATCTTGACAGAAAGCATGAAATCCAATGTTGTAATTAATAGGACAAGTGATGTTGACATAATGCAACTCCTGAATCACATACATAATGCTAGAAATGCCGTATATCAGAAACATCCGAAAAGTGAAAGTATAATTGTGCACTCTGAAATGAAAGGCTTTATACTTGCTCAGGGCTGCTCCCAAGATAACAAGCTATCAGTTGCAATTAACAGCCAGGGTATCCAGTCGAGAGCAGATGAGAAGTGGGGAGTACTGAAAGTGAAAAGTCCAACTTCTAATGAGAAAATGGAAAGAATACCACTTTTGAAGAGGGATATTATAATGAGTATGGAAGAGTTGCCTGAAAGATACGGGCGTCGATGTTTGGGCAGGGGATTCTTGACCTTTCGGCCAGCTATTTTTGTGTTGGTTTCGGTTGCTGTATGTCTTGGGGTATGTGTTGCCGTCCTTCATCCTGGTAGGGTTAGTGAGTTAGCAGTATCCGTTAGAAGGTGTTTGTTTAACTATTAG 2331 0.4457 MEPLSLPPLPVMDDAEDPSSIWDFSYLLDFDLDDQDIIINNNNSLPLPLNDHPAPSEIPQNDRVRKRDPRLTCSNFLAGRVPCACPELDAILEDEGLPGKKRARTARASASARCQVPACEVDISELKGYHRRHRVCLRCANAATVMLNGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPTADSGGATHSELLQPVAENEENNYDVEAGKDCSNLSTDINDVGVSLDLEDEPAPIPSSAPEAQNINSDSVVSLAVSGETRVNSGNTSNSPSYCDNKSAYSSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPNIMWINLLKDPLEYVHDIVAPGKMLSGRGTALVHLNDMIFRVMKDGTSVTNVKVNMHAPKLHYVHPTYFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHSWTEDNISCAFDNQLYKIYVPHTEESLFGPAFIEVENESGLSNFIPVLIGDKKICTEMKTLQQKLDVSLLSKQFRSASGGSICSSCETFALSHTSSSDLLVDIAWLLKDTTSENFDRVMTASQIQRYCHLLDFLICNDSTIILGKILPNLMILTESMKSNVVINRTSDVDIMQLLNHIHNARNAVYQKHPKSESIIVHSEMKGFILAQGCSQDNKLSVAINSQGIQSRADEKWGVLKVKSPTSNEKMERIPLLKRDIIMSMEELPERYGRRCLGRGFLTFRPAIFVLVSVAVCLGVCVAVLHPGRVSELAVSVRRCLFNY* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2428 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 774 IPR044817 GO:0003677
Gso11g2428 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 7 16 774 - -
Gso11g2428 776 MobiDBLite consensus disorder prediction 178 208 - -
Gso11g2428 776 Pfam SBP domain 114 188 IPR004333 GO:0003677
Gso11g2428 776 ProSiteProfiles Zinc finger SBP-type profile. 111 188 IPR004333 GO:0003677
Gso11g2428 776 SUPERFAMILY SBT domain 112 190 IPR036893 GO:0003677|GO:0005634
Gso11g2428 776 Gene3D - 109 175 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2428 Gso-Chr11 40291080 40298136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2428 7 770 SBP-box Gene Family AT5G18830 47.595 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g2428 SBP 5.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2428 - - gmx:100776034 1516.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0840 15 7719392 7727381 Gso11g2428 11 40291080 40298136 GST