Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2420 ATGACCGATGAACAACGAGAACCACAAGCTTCCCCGAGCAATGGCGTCCACAAGTTAGAAAGAAAACAAATAGCTGAAAGAGAAAGAAAACAAATAGCTGGAAGGGATAGATCGGTTTTTAGAGGCAGGCGTCCACGACCTGGGTTTTCTGATTCATTTTCAAGCACTGACTTGGAAGCTTTAGAGATTGAAGAGGGCTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGGCCAGCACTTCTGATTCGGAGAGTCAGGGATCTTTTGCTGGGGCACCTAATACCAATAACCAATGGCGGGGTTTCTTTAAACTACTCAAGAAAGGATCACAAATGCCTTTCCAACCTTTTCACCCACTTAAAAATGTTCCAAAACTGACAAGAAGAAAAAGCAAGAGGATCAGGGAGGACCTCATTCCTTCTCTGAATTCTCCAGCTCTTCATGCATCTTTTGACGCTGAGTTTGGCTGCTTCAAATCTTCCTGGAAAAACTTCACTCTCGCCGAGATCCAAGCTGCAACCAATGACTTTAGCCATGAAAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTGGGCAAATTGGAGGATGGAAACTTTGTTGCCATTAAAAGGTTGACAAGAGGGTGCCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTGCACGTGGACCACCCAAACATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCCTGTCATCCATACTTTATGGACCCAGAGAGAAACTGAATTGGAACCTCAGATATAAGATTGCTTTGGGGACTGCTGAGGGCCTTCGCTATCTGCATGAGGAGTGTCAAAGAAGGATCATTCACAAAGACATCAAAGCTTCTAATATTCTTCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTTGGGCTTGCAAAGTGGTTGCCCGACCAATGGACTCATCACACCGTCTCCAAAGTGGAAGGCACATTCGGCTACCTTCCTCCTGAATTCTTTATGCATGGTATAGTAGATGAAAAGACTGATGTCTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAAAAGTCTGGTGATGTGGGCAAAACCTTTGCTAACTGCAAATAACATCAAAGAGCTTGTGGATCCAGTTTTGGCTGATGCTTATGATGAAGAGCAGATGAAACTTGTAACCTTAACAGCTTCTCTGTGTGTAGACCAGTCCTCAATTCAACGACCGGATATGAGCCAGGTATTTGATATACTAAGAGGGGAAGAAGAGAGCTTAAGAATCATGGAAGAACGATCGAAGTCAAAACTTCAGAGGACATACTCTGAAGAACTCTTTGATGCAGAAGAGTACAACTCAACAAAGTTTTTGAGTGAGAGGGATCGACACATGGAGACTATTCTAGGCTGCAGTAGCTCTGTTACAGACGATGAAGAGAAAATCTAG 1521 0.4352 MTDEQREPQASPSNGVHKLERKQIAERERKQIAGRDRSVFRGRRPRPGFSDSFSSTDLEALEIEEGSPRSQGSETPSSRASTSDSESQGSFAGAPNTNNQWRGFFKLLKKGSQMPFQPFHPLKNVPKLTRRKSKRIREDLIPSLNSPALHASFDAEFGCFKSSWKNFTLAEIQAATNDFSHENLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWNLRYKIALGTAEGLRYLHEECQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLTANNIKELVDPVLADAYDEEQMKLVTLTASLCVDQSSIQRPDMSQVFDILRGEEESLRIMEERSKSKLQRTYSEELFDAEEYNSTKFLSERDRHMETILGCSSSVTDDEEKI* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2420 506 Pfam Protein tyrosine and serine/threonine kinase 182 441 IPR001245 GO:0004672|GO:0006468
Gso11g2420 506 PANTHER OS08G0249100 PROTEIN 43 482 - -
Gso11g2420 506 ProSitePatterns Protein kinases ATP-binding region signature. 185 207 IPR017441 GO:0005524
Gso11g2420 506 MobiDBLite consensus disorder prediction 19 44 - -
Gso11g2420 506 SMART serkin_6 179 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2420 506 ProSiteProfiles Protein kinase domain profile. 179 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2420 506 MobiDBLite consensus disorder prediction 1 98 - -
Gso11g2420 506 SUPERFAMILY Protein kinase-like (PK-like) 164 466 IPR011009 -
Gso11g2420 506 Gene3D Phosphorylase Kinase; domain 1 145 253 - -
Gso11g2420 506 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-PROTEIN KINASE RBK2 ISOFORM X1 43 482 - -
Gso11g2420 506 MobiDBLite consensus disorder prediction 68 98 - -
Gso11g2420 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 298 310 IPR008271 GO:0004672|GO:0006468
Gso11g2420 506 Gene3D Transferase(Phosphotransferase) domain 1 256 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2420 Gso-Chr11 40219924 40223795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2420 151 448 Receptor kinase-like Gene Family AT1G53420 39.869 1.98e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Gso11g2420 PK_Tyr_Ser-Thr 5.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2420 - - gmx:102670300 989.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0845 15 7765964 7769667 Gso11g2420 11 40219924 40223795 GST