Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2416 ATGGCATCATTGGTAGCCAGTGGTAGCAGTCAAATGGCTCCTTCAGTTTCTGTCCAAGAAAAAGGGAGTAGGAATAAGAGAAAATTCAGGGCTGATCCACCTTTAGGCGAGCCAAATAAGATTATTCCTTCCCCTCAGCATGAAAGCCTCAGCAATGAATTTTCTGCTGAAAAGTTCGAAATAACCACAGGTCATGGACAAGCTAGTGCTTCTGACATGTGCAGTGTAAGCCAAGATCATTCTGATGGGTTGAAGCTTGACCTTGGATTGTCTAGTCCTTTACCTTCATCTGACGTCAGGCTTAGCCAACCTAAGGAGGAACTTGAGGTTGATGAATTCCATGATGCTGATTGGAGTGATCTCACTGAAGCCCAATTGGAAGAACTTGTTCTGAGCAATTTGGACACCATTTTCAAGAGTGCAGTAAAAAAAATTGTTGCATGTGGCTACATTGAAGACGTTGCTACAAAGGCCATCTTAAGGTCTGGCATTTGTTATGGATGTAAAGATGCTGTGTCTAATGTAGTTGACAAGGGTTTAGCATTTCTTAGAAATGGCCAAGAGATTGATCCTTCACGAGAGCACTATTTTGAAGATTTAGTGCAGCTAGAGAAGTATATTTTGGCTGAATTGGTCTGTGTTCTTCGAGAGGTTAGGCCATTGTTCAGTACCGGGGATGCAATGTGGCGTTTGCTGATTTGTGACATGAATGTGTCACTTGCTTGTGCAATGGATGATGACCCTTCAAGCAGTTTAGGTAGTGATGGCATTGATGATGGTTGTTCTTCTGTTCAGACTGAACCACAGTTAAAGTTAGAAACAAAAGGTCCTGAATTAAGTCCTTGTAAATCAATCTCCTCAGGTTCTCAACCCGAGAAATCCTCTGTGGCAGGAAATACTGGTTTGGACAAGTCAAAGAAATCTCAAATTCTTGTTGGACCATCGGGGAAAGAGGCTGCTAATTCTGGATGTGAATTTATTGATAAATCTTCTAGTACTTCTGGGACATCTCAATCTCCTTTGGTGGAAGAAAAGTGTGGGAGCGTCAGAAAGGTCCATTCCAGTAGCAATAAGAGAGACTACATTCTTCGACAGAAGTCATTCCACATGGAAAAAAGTTATCGGACATATGGACCTAAAGGGTCTTCAAGAGGAGGAAGACTGAATGGCTTGAATGGATTAATCTTGGATAAAAAACTTAAATCTGTATCTGAGTCTACTACCATAAACTTAAAGAGTGCATCGCTAAACATAAGTAAGGCAGTGGGAGTTGATGTGACACAAGACAATTTAAATGCTGATTTTTCATCTAATGATGGACCATCAACCCCCACTGCATTTAGTCTGGATTCTACTGTTACTGTTTCTCAGTCAACCAATACTTTATCTTCAGTGCATGAAGCAAATGCTATACCTGCAGTTGGTAGCCCAAATGTATTATCAGCTACAGATACTGATCTTTCTCTTTCTTTGTCTTCAAATAGTAAGTCTCCTACAACAACTGTCCGCTGCAATAATGAGGCACCTAATAGTAGTTGTATGGGGATACCTCATGACAGGTCCCTGGGGAAGTGGATACCCCAAGATAGAAAGGATGAGATGATTTTGAAGCTAGTTCCAAGGGTTCGGGAGCTGCAAAATCAGCTTCAAGAATGGACAGAGTGGGCAAATCAGAAGGTTATGCAGGCTGCTCGTCGGCTGAGTAAGGATAGGGCCGAGCTTAAGACACTGAGACAAGAGAAAGATGAAGTTGAACGTCTTAAAAAAGAAAAACAATCTCTAGAGGAAAACACTATGAAGAAGATTTCTGAGATGGAAAATGCCTTGTCTAAAGCGAGTGCACAGGTAGAAAGAACCAATGCTGATGTCCGGAAACTTGAGGTGGAAAATGCTGCACTGAGGAAAGAGATGGAGGTTGCTAAGTTACAAGCGGCTGAGTCAGCCACAAGCTGTCAAGAGGTCTCAAGGAGGGAAAAGAAGACCCAAATGAAGTTTCAATCATGGGAGAAGCAGAAATCCTTGTTTCAGGAAGAGCTAATGAATGAAAAACACAAATTAGCTCAGTTGCAGCAAGAATTAGAGCAAGCTAAAGTGCAACAGCAGCAAGTCGAGGCTAGGTGGCAGCAAGCAGCAAAGGCAAAAGAAGAACTCCTCCTGCAGGCCAGTTCTATAAGAAAAGAAAGGGAACAAATTGAGGAGTCAGCAAAATCAAAGGAGGATATGATCAAACTGAAAGCAGAGGAAAATCTACACAGGTACAGAGATGACATCCAGAAACTTGAAAAAGAAATTGCACAACTGAGACAGAAGACCGACTCTTCTAAAATTGCTGCACTGAGAAGGGGAATTGATGGAAACTATGTCAGCAGCTTTATGGACGTGAAAAGCATGGCTCTGAAAGAATCGCGGGCCGCTTTTATCTCAGAAATGGTTTCAAATTTAAATGACTACTCTTTGATAGGGGGTGTAAAGCGGGAAAGAGAATGTGTCATGTGCCTTTCTGAGGAGATGTCTGTTGTATTCCTCCCATGTGCTCATCAGGTTGTTTGCACAACATGCAATGATCTCCACGAGAAACAAGGTATGCAAGACTGTCCTTCTTGCAGGAGCCCCATCCAGAGGCGTATTTCTGTCCGATTTGCCCGTACATAA 2652 0.4231 MASLVASGSSQMAPSVSVQEKGSRNKRKFRADPPLGEPNKIIPSPQHESLSNEFSAEKFEITTGHGQASASDMCSVSQDHSDGLKLDLGLSSPLPSSDVRLSQPKEELEVDEFHDADWSDLTEAQLEELVLSNLDTIFKSAVKKIVACGYIEDVATKAILRSGICYGCKDAVSNVVDKGLAFLRNGQEIDPSREHYFEDLVQLEKYILAELVCVLREVRPLFSTGDAMWRLLICDMNVSLACAMDDDPSSSLGSDGIDDGCSSVQTEPQLKLETKGPELSPCKSISSGSQPEKSSVAGNTGLDKSKKSQILVGPSGKEAANSGCEFIDKSSSTSGTSQSPLVEEKCGSVRKVHSSSNKRDYILRQKSFHMEKSYRTYGPKGSSRGGRLNGLNGLILDKKLKSVSESTTINLKSASLNISKAVGVDVTQDNLNADFSSNDGPSTPTAFSLDSTVTVSQSTNTLSSVHEANAIPAVGSPNVLSATDTDLSLSLSSNSKSPTTTVRCNNEAPNSSCMGIPHDRSLGKWIPQDRKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLSKDRAELKTLRQEKDEVERLKKEKQSLEENTMKKISEMENALSKASAQVERTNADVRKLEVENAALRKEMEVAKLQAAESATSCQEVSRREKKTQMKFQSWEKQKSLFQEELMNEKHKLAQLQQELEQAKVQQQQVEARWQQAAKAKEELLLQASSIRKEREQIEESAKSKEDMIKLKAEENLHRYRDDIQKLEKEIAQLRQKTDSSKIAALRRGIDGNYVSSFMDVKSMALKESRAAFISEMVSNLNDYSLIGGVKRERECVMCLSEEMSVVFLPCAHQVVCTTCNDLHEKQGMQDCPSCRSPIQRRISVRFART* 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2416 883 SUPERFAMILY RING/U-box 828 875 - -
Gso11g2416 883 ProSiteProfiles Zinc finger RING-type profile. 829 869 IPR001841 -
Gso11g2416 883 Coils Coil 743 777 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 1 20 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 270 350 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 44 58 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 325 343 - -
Gso11g2416 883 PANTHER OS05G0141500 PROTEIN 4 882 IPR046934 -
Gso11g2416 883 Coils Coil 714 741 - -
Gso11g2416 883 Pfam Zinc finger, C3HC4 type (RING finger) 826 874 - -
Gso11g2416 883 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 812 879 IPR013083 -
Gso11g2416 883 MobiDBLite consensus disorder prediction 1 58 - -
Gso11g2416 883 Coils Coil 560 643 - -
Gso11g2416 883 Pfam Family of unknown function (DUF6592) 133 245 IPR046527 -
Gso11g2416 883 Coils Coil 672 706 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 280 306 - -
Gso11g2416 883 MobiDBLite consensus disorder prediction 488 512 - -
Gso11g2416 883 PANTHER OS05G0141500 PROTEIN 4 882 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2416 Gso-Chr11 40186177 40190464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2416 829 878 C3H Transcription Factor Family AT1G73950 44.000 8.72e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2416 - - gmx:100818439 1617.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0848 15 7806615 7810880 Gso11g2416 11 40186177 40190464 GST
Gso7g2148 7 45282679 45287665 Gso11g2416 11 40186177 40190464 PCT
Gso17g0161 17 1512679 1517134 Gso11g2416 11 40186177 40190464 PCT
Gso11g2416 11 40186177 40190464 Gso7g2148 7 45282679 45287665 PCT
Gso11g2416 11 40186177 40190464 Gso17g0161 17 1512679 1517134 PCT