Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2412 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCCTCAGTGAGTGGCTCTAGAGACTTCAGAGAACTTGGACCTTACTGTGCCCAAAGGAAGCACATTCTCACTCAGAGTTCATTGCAATTTGTTCCTGTCCCTTCCCATAACTTCACTTTGGAATACTCTGTGCTCACTCAGAGAGGGTACTATCCTGATTCACCTGATAAAGAAAACCAAGATAGTTTTAGCATTAGGACACAGTTTCAAGGCAACCCCAGTGTCCATTTCTTTGGTGTCTACGATGGACATGGCGAATTTGGTGGCCAGTGTTCAAATTTTGTTAAGGATAGGTTGGTGGAAAATTTGTCTAGTGACATTGCATTGTTGGAGGACCCTGTTAAGGCCTACACCTCTGCATTCCTGACCACGAATGATGACTTGCATAAGAATGAGATTGATGATTCTTTGAGTGGCACCACGGCAATTACGGTGCTGGTTATTGGGAACACCCTTTATGTTGCTAATGTTGGTGATTCTAGAGCAGTGCTGGCTGTTAAGGACGGGAACCGGGTTGTTGCGGAGGACTTGTCTTCTGATCAGACACCATTTAGGAGAGATGAGTATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTGTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCGGATATTCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTTCCTGGAGCTGCTTTTACAAGGAGTGTTGGGGATAAGTTGGCTGAGACTATTGGTGTTATTGCTGTTCCTGAGGTGTCAACGGTTCAGCTTACACCTAACCATCTTTTCTTTGTTGTTGCAAGTGATGGTGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCAGATCCTCGTGATGCATGTGCTGCCATTGCTGGAGAGTCTTATAAACTATGGTTAGAACATGAGGGTCGAACAGATGATATAACAATTATCATAGTTCAGATCAAAGGCCTGTCTAATTCAGTTACATCTGGACATGGAGCAAGTGAGATCAATGTCAGTACTGTAACAAGGACAAAGAGCAAGAGGGTAAAGGGAGCATCTGAAATATCTGCCACTACTGGGTTAGATGTGTATCGTTCAGTCAGGAATGGTTTCTCTGATTTACAGTCCTGTCCTCAGCATGTGGTCTCAACTAGAAGCCCAGCCATAGTGGTCCCCTCTCCAGCATGTCAAACTCCAGTTGAATTGTAA 1284 0.4517 MGCVHGKCCTRYPSPSVSGSRDFRELGPYCAQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFSIRTQFQGNPSVHFFGVYDGHGEFGGQCSNFVKDRLVENLSSDIALLEDPVKAYTSAFLTTNDDLHKNEIDDSLSGTTAITVLVIGNTLYVANVGDSRAVLAVKDGNRVVAEDLSSDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDKLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNSVTSGHGASEINVSTVTRTKSKRVKGASEISATTGLDVYRSVRNGFSDLQSCPQHVVSTRSPAIVVPSPACQTPVEL* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2412 427 Gene3D - 47 347 IPR036457 -
Gso11g2412 427 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Gso11g2412 427 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 422 - -
Gso11g2412 427 CDD PP2Cc 71 345 IPR001932 -
Gso11g2412 427 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Gso11g2412 427 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Gso11g2412 427 Pfam Protein phosphatase 2C 79 320 IPR001932 -
Gso11g2412 427 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 422 - -
Gso11g2412 427 SMART PP2C_4 51 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2412 Gso-Chr11 40152992 40157169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2412 1 350 PP2C-type Phosphatase Gene Family AT3G06270 71.714 0.0 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2412 - - gmx:100817563 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0852 15 7841854 7846096 Gso11g2412 11 40152992 40157169 GST
Gso7g2149 7 45288830 45292473 Gso11g2412 11 40152992 40157169 PCT
Gso17g0160 17 1507265 1510814 Gso11g2412 11 40152992 40157169 PCT
Gso11g2412 11 40152992 40157169 Gso7g2149 7 45288830 45292473 PCT
Gso11g2412 11 40152992 40157169 Gso17g0160 17 1507265 1510814 PCT