Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2406 ATGATTGTGAAGGATCATTTTGTTGGTACTGAACTGGCAATGAGTAATACTTGTGTGGAGGAGGGAATAGATTTCTCTTGTGACCCATACATAGGGTTAGAATTTGATACAGCTGATGAAGCACTTAAGTATTACACTTCATATGCCAATCGAACAGGGTTTAAAGTTCGGATTGGTCAGCTTTATCGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCGAAGGAGGGACATCAACTTAGTTCAAGAACTGACTGTCCAGCATTCATAAGGGTACAACTAAATGGTTCTGGAAAGTGGGTGGTTGATCATTTTCATAAGGACCATAATCACCATCTTGAAATCAGTGGTGAAAATTGCACTCCAACATTGCAACCGAAGGGTGCTGGTGCTACAGTTATCAACTCTCTTACTGAGTTTCCTCGCAGGACGAGGAAGAAATTGCTTGAAGAAGCCAATGATGAGTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACTTGAAGGACAGTCCAGGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAACGAAGCCTACCAATTTTATCATGCATATGCAGCGCATTTGGGTTTTGGAGTTCGAATTGGTCAATTGTTTCGTTCTAAGAATGATGGGTCGATCACATCCCGCAGATTTGTTTGCTCTAAAGAGGGGTTCCAGCACCCTTCAAGAGTTGGTTGTGGGGCTTATTTAAGGATTAAGAGACAGCCATCGGGAAAGTGGATAGTGGACCGCCTCCGAAAAGATCATAACCATGATCTGGACTCTGAAAAGGTGGGCAGGGCAAAAAGTCTTCCTGCTTCTAATATTTTGGCTGAAGAGGTAGATACTGGATTGTTAAATGGTGACTTATTTAGAATAGATAACTACCCTGTCCCTAGAGGAGGTAGGCAAAATCACATTAGAAGTGAGTGGTATGGCATTCTTTTAGAGTATTTTCAATCAAGACAAGCAGAAGATACTGGATTCTTTTATGCCATGGAAGTTGACAATGGAAATTGCATGAACATATTTTGGGCAGATGGAAGATCTAGATATTCATGTAGTCACTTTGGTGATGTCCTTGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCATTTGCTACTTTTGTTGGAGTCAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTCTAATTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCTGCCTCTGACAGTTATCGCAGATCAAGACATTGCAATCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCCATCATCGCTTTTCTTTGTGGCAAATTAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTAATGGCTTTACAAAAGATTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAATGTCCTACTCAACAAATATGGATTGAAGGACGATGCTTGGCTAAAAGAAATGTATCAGAAGCGTGCATCTTGGGTTCCATTATATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAGAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCATGGAGTTCATTCCTCGGTATGAAAGGGGTCTCGAGCGACGCCGTGAAGAAGAAAGAAAAGAGGATTTTAACACTTCTAATTTTCAACCCATTTTGCAAACTAAAGAACCAGTAGAAGAACAATGTAGAAGGCTTTACACTCTTACTGTTTTCAAAATATTTCAGAAAGAGCTTTTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAGGAAGGGGGTCTGAGCAGATATATGGTGCGTAGATGTGGAAATGATATGGAGAAGCATGTAGTTACATTTAATGCATCAAATCTCAGCATTAGTTGTAGCTGTCAGATGTTTGAATATGAAGGTGTTCTTTGTAGACACGTGTTGAGGGTTTTCCAGATATTGCAATTAAGAGAAGTCCCTTCTCGCTACATCTTACACCGATGGACAAGAAATGCCGAGGATGGTGTTTTTCCTGACATGGAATCATGGAGTAGCTCTCAGGAACTAAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCTTTGAAAAGTATAAACTTGCCTTTGAAATTTTGCGCGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2289 0.4098 MIVKDHFVGTELAMSNTCVEEGIDFSCDPYIGLEFDTADEALKYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHLEISGENCTPTLQPKGAGATVINSLTEFPRRTRKKLLEEANDESSCPFGIIDFKRLRKEELEGQSRTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLDSEKVGRAKSLPASNILAEEVDTGLLNGDLFRIDNYPVPRGGRQNHIRSEWYGILLEYFQSRQAEDTGFFYAMEVDNGNCMNIFWADGRSRYSCSHFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALIADESEESFTWLFQTWLRAMSGRLPLTVIADQDIAIQRAIAKVFPVTHHRFSLWQIKAKEQENMGLMGNGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDDAWLKEMYQKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLMEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLTVFKIFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEYEGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDMESWSSSQELKNLMLWSLRETASKYIDAGATSFEKYKLAFEILREGGRKLCWHR* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2406 762 SMART 26again6 659 686 IPR006564 GO:0008270
Gso11g2406 762 Pfam MULE transposase domain 373 466 IPR018289 -
Gso11g2406 762 Pfam FAR1 DNA-binding domain 199 273 IPR004330 -
Gso11g2406 762 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Gso11g2406 762 ProSiteProfiles Zinc finger SWIM-type profile. 648 684 IPR007527 GO:0008270
Gso11g2406 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 119 IPR031052 GO:0006355
Gso11g2406 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 147 758 IPR031052 GO:0006355
Gso11g2406 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 147 758 - -
Gso11g2406 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 26 119 - -
Gso11g2406 762 Pfam SWIM zinc finger 655 681 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2406 Gso-Chr11 40092730 40095944 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gso11g2406 MULE 1.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2406 - - gmx:100816656 1546.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0857 15 7893201 7896402 Gso11g2406 11 40092730 40095944 GST