Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2402 ATGGCTTCCGTTGCATTCAGAAACCTAAATTCTAAGCGCTTCCTTTTCTCTTTGCATTTCACAAATGCTAATTACCATTCACTCTCTCGTGGAACTTGCACCGTCATATCCCAAAACTGCAATAATGCACCTCCTTTGGAGCTCGTTTCTCTACGGAGATCCTTAGCCACTTTCGCTCGAACAAAGCCCCATCTTAACGTGGGCACAATTGGGCATGTTGATCATGGGAAAACCACACTGACTGCTGCAATTACCAAGGTGCTAGCTGAAGAAGGTAAAGCTAAGGCCATTGCCTTTGAGGACATAGACAAGGCTCCCGAGGAGAAGAAGAGAGGGATTACTATTGCGACTGCTCATGTAGAGTACGAGACAGCAAAGAGGCACTATGCCCATGTTGATTGCCCAGGACATGCAGACTATGTTAAGAACATGATAACTGGAGCTGCACAAATGGATGGTGGAATTCTTGTCGTTTCTGCTCCTGATGGGCCAATGCCTCAAACAAAGGAACATATACTGCTTGCTCGTCAGGTTGGTGTGCCATCATTGGTCTGCTTTCTAAATAAGGTTGATGCTGTTGATGATCCAGAGTTGCTTGAACTTGTGGAAATGGAGCTTCGTGAACTGCTTAATTTCTACAAATTTCCTGGGGATGATATTCCAATTGTACGAGGTTCTGCTCTGGCTGCATTGCAGGGAACTAATGAAGAACTTGGAAAGAAGGCTATCTTAAAACTAATGGATGCTGTGGATGAATACATTTCGGATCCTGTGCGGCAACTTGACAAACCTTTCTTAATGCCAGTAGAAGATGTTTTCTCAATTCAGGGGCGTGGAACTGTTGTGACTGGTCGTGTTGAACAAGGCACCATCAAAGTAGGTGAGGAGGTTGAAGTATTGGGACTAACACAGAGTGGACCTTTGAAGACTACTGTAACTGGTGTGGAAATGTTCAAGAAAATTTTGGATCGAGGGGAAGCTGGTGATAATGTGGGACTTCTTCTACGTGGTCTGAAGCGCGATGATGTACAGAGAGGAATGGTCGTGACCAAGCCTGGTGCATTTAAAACATATAAGAAGTTTGAAGCAGAGATTTATGTTCTCTCAAAAGATGAAGGTGGCCGTCATACTGCTTTTTTCTCTAATTATAAGCCACAGTTTTACTTGAGGACTGCAGATGTTACCGGAAAGGTGGAATTACCGGAAAGTGTTAAGATGGTTATGCCTGGTGATAATGTGACTGCTACTTTTGAGCTGATATCACCTGTTCCTCTTGAAATAGGACAAAGATTTGCTTTGAGAGAGGGAGGCAGAACAGTTGGTGCAGGAGTTGTTTCCAAAGTGATGGCCTAG 1353 0.4412 MASVAFRNLNSKRFLFSLHFTNANYHSLSRGTCTVISQNCNNAPPLELVSLRRSLATFARTKPHLNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFEDIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLNFYKFPGDDIPIVRGSALAALQGTNEELGKKAILKLMDAVDEYISDPVRQLDKPFLMPVEDVFSIQGRGTVVTGRVEQGTIKVGEEVEVLGLTQSGPLKTTVTGVEMFKKILDRGEAGDNVGLLLRGLKRDDVQRGMVVTKPGAFKTYKKFEAEIYVLSKDEGGRHTAFFSNYKPQFYLRTADVTGKVELPESVKMVMPGDNVTATFELISPVPLEIGQRFALREGGRTVGAGVVSKVMA* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2402 450 PANTHER ELONGATION FACTOR TU-RELATED 36 449 - -
Gso11g2402 450 Pfam Elongation factor Tu GTP binding domain 62 255 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 TIGRFAM EF-Tu: translation elongation factor Tu 55 449 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso11g2402 450 Gene3D Translation factors 394 449 - -
Gso11g2402 450 Hamap Elongation factor Tu [tuf]. 53 450 IPR004541 GO:0003746|GO:0005525|GO:0006414
Gso11g2402 450 CDD EF_Tu 63 257 IPR041709 -
Gso11g2402 450 PANTHER ELONGATION FACTOR TU 36 449 - -
Gso11g2402 450 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 PRINTS GTP-binding elongation factor signature 110 118 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 PRINTS GTP-binding elongation factor signature 130 140 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 PRINTS GTP-binding elongation factor signature 146 157 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 PRINTS GTP-binding elongation factor signature 183 192 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 TIGRFAM small_GTP: small GTP-binding protein domain 66 202 IPR005225 GO:0005525
Gso11g2402 450 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 359 450 IPR009001 -
Gso11g2402 450 Gene3D - 54 257 IPR027417 -
Gso11g2402 450 SUPERFAMILY Translation proteins 259 354 IPR009000 -
Gso11g2402 450 CDD EFTU_II 265 353 IPR033720 -
Gso11g2402 450 CDD EFTU_III 356 445 - -
Gso11g2402 450 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Gso11g2402 450 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 258 IPR000795 GO:0003924|GO:0005525
Gso11g2402 450 Pfam Elongation factor Tu C-terminal domain 356 448 IPR004160 -
Gso11g2402 450 Gene3D Translation factors 260 390 - -
Gso11g2402 450 Pfam Elongation factor Tu domain 2 279 350 IPR004161 GO:0005525
Gso11g2402 450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 280 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2402 Gso-Chr11 40031825 40036748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2402 58 448 Eukaryotic Initiation Factors Gene Family AT5G60390 29.748 5.60e-44 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2402 K02358 - gmx:102667962 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0864 15 7970757 7974347 Gso11g2402 11 40031825 40036748 GST