Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2389 ATGAACATCTCAATATCAGCCTGCGCCTGCAAACAGGAGCTGCCCCTAGTAAGCTTCCAAAAGGGATCACTATCGATGGAGTCGTTGTTTCATAATAGGAATAAGGAGAAGGTGGTGGTGATAATGGGGGCTACTGGTACCGGCAAAACGAAGTTGGCCATAGACGTGGCCAAACACTTCCAACCCGCGGAGGTAGTGAACTCAGACAAAATGCAAGTCTACGAGGGCCTGGACATCACCACCAACAAGGTCACCGAAGAAGAGTGTTCTGGGGTCCCACATCATCTGCTTGGCACTGTTGACCCCTACATAAATTTCACCGCCAACGACTTCTGTCGCCACGCCACTTTGGCTATCGATTCCATTGTGGAAAAAAATGGCTTACCCATCATCGCTGGAGGCTCTAATTCTTACTTAGACGCGTTGGTCAATCATTATCCCGAGTTTAGGTTAAGGTACCAGTGCTGTTTCCTCTGGGTTGACGTGTCACTCCCGGTTCTCCATTCTTCCCTCCAGGCACGTGTGGACCGCATGATCGAAGCTGGTCAAGTCAACGAGGTTCGTCAATTCTTCGACCCCAGTGTAACCGATTACACTAAAGGGATACGAAGAGCCATTGGTGTGCCCGAATTCGATGACTTTCTAAGAGCAGAGGCTAATGGAGGCGTTGATGAGAGAACAAAACAGAGACTTCTTGAGGCCGCCATTGCAAGGTTGAAGATCAACAACTGCACGCTCGCCAACCGTCAGATTCAGAAGATCCACCGCTTGCACGGGCTGTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTTGGGTCACGTGACGCCTGGCACGATCACGTGCTCGCCAAGAGCTTGATCGTCCTCCACAAGTTTCTCTACGGGGAGAAGAAAACGCCGCACCACGTCGTCCCTGCCGGAATCGTCTCTCACAAAGATGTAATTGCGGCGGCGGCGCCGGTAGCAATGGCCGCAACGCGTTAA 996 0.5211 MNISISACACKQELPLVSFQKGSLSMESLFHNRNKEKVVVIMGATGTGKTKLAIDVAKHFQPAEVVNSDKMQVYEGLDITTNKVTEEECSGVPHHLLGTVDPYINFTANDFCRHATLAIDSIVEKNGLPIIAGGSNSYLDALVNHYPEFRLRYQCCFLWVDVSLPVLHSSLQARVDRMIEAGQVNEVRQFFDPSVTDYTKGIRRAIGVPEFDDFLRAEANGGVDERTKQRLLEAAIARLKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSRDAWHDHVLAKSLIVLHKFLYGEKKTPHHVVPAGIVSHKDVIAAAAPVAMAATR* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2389 331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 198 IPR027417 -
Gso11g2389 331 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 27 302 - -
Gso11g2389 331 Gene3D - 35 297 IPR027417 -
Gso11g2389 331 Pfam IPP transferase 72 148 - -
Gso11g2389 331 Pfam IPP transferase 152 252 - -
Gso11g2389 331 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 27 302 IPR039657 -
Gso11g2389 331 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 164 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2389 Gso-Chr11 39901250 39903214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2389 152 303 C2H2 Transcription Factor Family AT2G27760 32.022 1.45e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2389 K10760 - gmx:100812928 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0874 15 8083251 8085423 Gso11g2389 11 39901250 39903214 GST
Gso7g2171 7 45471455 45473481 Gso11g2389 11 39901250 39903214 PCT
Gso17g0140 17 1303137 1305119 Gso11g2389 11 39901250 39903214 PCT
Gso11g2389 11 39901250 39903214 Gso7g2171 7 45471455 45473481 PCT
Gso11g2389 11 39901250 39903214 Gso17g0140 17 1303137 1305119 PCT