Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2384 ATGACTAAGGAGTTAGAAACTCTCATGGGGAAAGTGAGAGGTTTGAGCCTTCTATCTCTTGGTGGTTGCTTCGATGGCTGCTATGACCACACTCAAGCCTATGGATTAGGGACAAGGATCTGGAACTTCAGTGATCGACCAGTGGAGCTGCAGATAAGGGTGGGATCAATACTGAAGAAGGTTCACACTTTGAAGCCAGGGTCATGTAAGAGGCTGAGAAGTAAACGCATATACAAGGCATATATGCCTGGTAAGAGTGGCAATGATGGTGGGGGATTGAAGAGTTTGCTGTATTACTATGATGAAACTTGCCACCCTTATGTTTGGATTCATGACATAGGGGGTGGTTCCATGAGGATGGTTAAACAGCAGTATATTAGCCTTGAGAATTTGAGGGATTCTTCTGAGATCAGGATCTTGAGGGATCAGCAAAGAGGTTGCATTTCAGTTCTCAAGAGAACTAGGCCAGATTTCTGCAGCAAAGAAAGACATCATTTTCCCTCACAACACGCATCCGATTCGGAGCTACCTCTTTTTTGTTTCATCTTCTTCTTTCTTTCTTTGTTTCTGATTCTGATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTACCTCCAAAACCGACCACCACCTCCACCCCCTTCTTACTACTACCATACAGAATCCCACCCTGCACCACCACCGCAGCCGCAAGGTTACTTTCTCCCTTCAGCAACCCCTTACGCCCCTCCCCCTCCCATGCCGCCGCCGCCACCACCACAAACCCACTCAATTTCTTTCTATTACAGCTCCAACCCCAATTCCTACGGCACTCCCACTCTCGCCCCTCGCTTTCACTACCAGCAGCATTACTACCACCCCCAGCCCCAGCCCCAGCTCGCCGCGTGGCCCGTCCCTCGTCCTGCTGCCCCCACTCCTCCGCCCTACGTCGACCACCAGACCGCCAAGAAGATAAGGAACTACGTCAATGTCCACAAAGACACCCTGCGCCTCGAGGTCGACGACCATAACCCCGATCTTCATCTTCTCTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTATCTTATACTTTGCCAAGGAAGAAGAAAAATGTAGGTTTGTTCCATTATATCCCGAGGCATTTCAGCCGGTCAGAATCCCCTTTCAGAAAGGAGTTGGCCAGAAATTTGCTCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAGTTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTAGTAATATGTGCTGAAACAAGTTTGAAAACTACCTCAGAAGATGAAACTCCTGGTGATTCCTTGCTAGACGCATCCCCTCACATGCAAATAACTCAAGGTGTCTTAGAGAAAAGTAATGGTGCTGGTCCATTCCTAATAAAAGTAGTTAAGCAGATTTTGTGGATTGATGGTGTTCGTTATGAGTTGAGGGAGTTATATGGAATAGGAAACTCATCCGCAGCTGATTTTGATGACAATGATCCTGGGAAGGAGTGTGTCATATGCATGACTGAACCAAAGGATACTGCTGTTTTACCTTGTCGACATATGTGTATGTGCAGTGAGTGTGCAAATGCTCATCGACTTCAATCCAATAAATGCCCTATATGCCGTCAGTCTATTGAGGAACTTATAGAGATCAAGGTGAACAATGGCGATCATTGA 1692 0.4693 MTKELETLMGKVRGLSLLSLGGCFDGCYDHTQAYGLGTRIWNFSDRPVELQIRVGSILKKVHTLKPGSCKRLRSKRIYKAYMPGKSGNDGGGLKSLLYYYDETCHPYVWIHDIGGGSMRMVKQQYISLENLRDSSEIRILRDQQRGCISVLKRTRPDFCSKERHHFPSQHASDSELPLFCFIFFFLSLFLILMGISWSGRRRNNYLQNRPPPPPPSYYYHTESHPAPPPQPQGYFLPSATPYAPPPPMPPPPPPQTHSISFYYSSNPNSYGTPTLAPRFHYQQHYYHPQPQPQLAAWPVPRPAAPTPPPYVDHQTAKKIRNYVNVHKDTLRLEVDDHNPDLHLLSFVFDAVYDGSITILYFAKEEEKCRFVPLYPEAFQPVRIPFQKGVGQKFAQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTTSEDETPGDSLLDASPHMQITQGVLEKSNGAGPFLIKVVKQILWIDGVRYELRELYGIGNSSAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCSECANAHRLQSNKCPICRQSIEELIEIKVNNGDH* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2384 563 Pfam Zinc finger, C3HC4 type (RING finger) 506 552 - -
Gso11g2384 563 PANTHER MAHOGUNIN 193 562 IPR045194 GO:0061630
Gso11g2384 563 SMART ring_2 508 546 IPR001841 -
Gso11g2384 563 MobiDBLite consensus disorder prediction 206 257 - -
Gso11g2384 563 ProSiteProfiles Zinc finger RING-type profile. 508 547 IPR001841 -
Gso11g2384 563 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 193 562 - -
Gso11g2384 563 MobiDBLite consensus disorder prediction 207 257 - -
Gso11g2384 563 SUPERFAMILY RING/U-box 507 553 - -
Gso11g2384 563 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 493 557 IPR013083 -
Gso11g2384 563 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 507 547 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2384 Gso-Chr11 39844115 39855861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2384 281 562 C3H Transcription Factor Family AT3G06140 59.259 6.80e-107 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2384 - - gsj:114373285 1085.48