Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2375 ATGGATCAAAACAAGCAAGGTGAAGCAGCAGAAGGAGGGAATATTGGTCATCCAGCACATGGCAAGAACCAAGAAGAGCAATCTAACCCTATGATAGCACCTACAAATCCTCCCAAAAAGAAAAGCTTGGAGGAACAACTCAACGACTTCTGGGCAGCACAGCGCGAGGAAGCTAAGATGACCACTAATTTCAAGACTCACAGCTTGCCCTTGTCGAGGATTAAGAAGATCATTAAGACCGACAAGGATGTAAAGATGATATCTGCTGAGACTCCCGTGGTGTTTGCCAAAGCCTGTGAAATGTTCATCAAGGAGCTCACAATAAGGGCTTGGGCTAATACTGAGGCTCGCAAAGGGAAGATACTTTCCCAGCGTGACCTTGTATCCGCCATCTCCCAGACTGCTTCTTTTGATTTTCTCGATGATATTATGCCCAAGGATGCAGGCTTACCAAGAACAAGCATTGCTTCAACAGAGAATGCTTATCTAAACATGCCACCTCAGCAGAATGTTGCAGGCCTTCCATATGATGCTCCAACCATGGCCTTTCCTAATCTAAACCATCATGCTCCCAATTAG 579 0.456 MDQNKQGEAAEGGNIGHPAHGKNQEEQSNPMIAPTNPPKKKSLEEQLNDFWAAQREEAKMTTNFKTHSLPLSRIKKIIKTDKDVKMISAETPVVFAKACEMFIKELTIRAWANTEARKGKILSQRDLVSAISQTASFDFLDDIMPKDAGLPRTSIASTENAYLNMPPQQNVAGLPYDAPTMAFPNLNHHAPN* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2375 192 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 24 169 - -
Gso11g2375 192 MobiDBLite consensus disorder prediction 21 35 - -
Gso11g2375 192 Gene3D Histone, subunit A 34 146 IPR009072 GO:0046982
Gso11g2375 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA 24 169 IPR027170 GO:0003700|GO:0006355|GO:0016602
Gso11g2375 192 MobiDBLite consensus disorder prediction 1 43 - -
Gso11g2375 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 131 IPR003958 -
Gso11g2375 192 SUPERFAMILY Histone-fold 12 140 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2375 Gso-Chr11 39714566 39717902 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2375 47 147 CCAAT-HAP5 Transcription Factor Family AT1G56170 61.386 5.26e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso11g2375 CBFD_NFYB_HMF 1.1e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2375 K08066 - gmx:100808635 385.956