Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2374 ATGCAAGTCCACGTCTATAACAACAACGCTAAAATGGATCAAAACCAGCATGTTCAACCAGCACAAGAAGCATATGGCGAAAACCAATATCAATCTAACCCCGTGACGACACCTACCGTTCTTCCAACTCAGACATCTGATTCTTCTCTTTCATCATCCTACCCAAGACAGCACCCAAATGATCCCCAATTGGAAGCCATGTACGAGCTACGACAAGAACGCTTGCAACAACAACTCAACAACTTCTGGGCAAAACAGTGCCAGGAAATCCAGGAGGCCACTGATTTAAGGACTCACAGCTTGCCTTTGGCTAGGATTAAGAAGATTATGAAGTCTGATGAGGATGTAAAGCTGGTATCAGCTGAGGCTCCGGTGGTGTTTGCCAAGGCTTGTGAAATGTTCATTATGGAGCTCACTTTGAGGGCTTGGGCTAATGTTGAGGAGGACCAAAGGAAGATAATTAAGAAGCATGACATTGCATCTTCAATCTCAAGGGCAGATGTGTTTGATTTTCTTATTGATACTGTCCCCAGGCCGCTTGAAAATATATTGGATCAACAAGGGTTTGTAGGCCTACCAACAAGCACTGTTCCAACTCCATTGAATGATGCTTGCTATCATAATCCCCCTCCTCAGGCGCTTGTTCCGGGCAATCCATATGGTTCTCCAAGAATAGCTGTGGGAATGCCTATTCTTGATCAAAATCATCCTGGGCTGCAAATCCATCATTTTCTAACTCCAATGGAGCCCACCCCCACCCCCACCCCCAATCCCCAAAACCCTTCTCCTAGTTCGGATTGTTGA 804 0.4565 MQVHVYNNNAKMDQNQHVQPAQEAYGENQYQSNPVTTPTVLPTQTSDSSLSSSYPRQHPNDPQLEAMYELRQERLQQQLNNFWAKQCQEIQEATDLRTHSLPLARIKKIMKSDEDVKLVSAEAPVVFAKACEMFIMELTLRAWANVEEDQRKIIKKHDIASSISRADVFDFLIDTVPRPLENILDQQGFVGLPTSTVPTPLNDACYHNPPPQALVPGNPYGSPRIAVGMPILDQNHPGLQIHHFLTPMEPTPTPTPNPQNPSPSSDC* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2374 267 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 19 249 - -
Gso11g2374 267 MobiDBLite consensus disorder prediction 28 59 - -
Gso11g2374 267 Gene3D Histone, subunit A 64 178 IPR009072 GO:0046982
Gso11g2374 267 SUPERFAMILY Histone-fold 70 172 IPR009072 GO:0046982
Gso11g2374 267 MobiDBLite consensus disorder prediction 28 61 - -
Gso11g2374 267 MobiDBLite consensus disorder prediction 245 267 - -
Gso11g2374 267 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 19 249 - -
Gso11g2374 267 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 100 162 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2374 Gso-Chr11 39701006 39702710 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2374 12 230 CCAAT-HAP5 Transcription Factor Family AT1G08970 43.636 8.25e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso11g2374 CBFD_NFYB_HMF 1.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2374 K08066 - gmx:100807580 481.87