Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2373 ATGGATCAAAACCAGCATGATCGACTAGCACAAGAAGCACAATATCAATCTAACCCCATGATGGCACCTACCATACTTCCAACTCAGACATATGGTCATTCTCTTTCATCATCATACCCAAGACTACACCCATATGATCCCCAAGCCATGTACCAACTACGACAAGAACCCTTGCAACAACAACTAACCAACTTCTGGGCAAAAAAACGCCAGGAGATTGAGGAGACCACTAGTTTCAAGACTCATAGCTTGCCTTTGGCAAGGATTAAGAAGATTATGAAGGGTGAGGAGGGTGTGAGGATGGTATCAGCTGAGGCTTCTGTGGTGTTTGCCAAGGCCTGTGAAATGTTCATGATGGAGCTCACAATAAGGGCTTCAGGTAGTGCTGAGGAGAACCAAAGGAAGATAATTAAGAAGTGTGACGTTGCATCTGCAATCTCAAGGACAGATGTGTTTGATTTTCTGGTTGATATTGTCTCAGGGCACAACAAAATAATGGAGCAACAAGGGTTTGTAGGCATACCAAGAATTGGCACTGCTCTAACTCCAACAGAGAATGTTCCTTACTATCAGATGCCCCCTCATCAATCGCTTGTTCCGGGCCCTCCATATGGTTCTTCAGGAATGGTTGTGGGAATGCCTGTTCATTATCAAAATCATCCTGGGCTGCAAACTCCAACAATGGGGCCCACCCCCAATCCACAAAACTCTTCTCGTGATTCGGATTCCTGA 732 0.4522 MDQNQHDRLAQEAQYQSNPMMAPTILPTQTYGHSLSSSYPRLHPYDPQAMYQLRQEPLQQQLTNFWAKKRQEIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTDVFDFLVDIVSGHNKIMEQQGFVGIPRIGTALTPTENVPYYQMPPHQSLVPGPPYGSSGMVVGMPVHYQNHPGLQTPTMGPTPNPQNSSRDSDS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2373 243 Gene3D Histone, subunit A 48 160 IPR009072 GO:0046982
Gso11g2373 243 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 25 193 - -
Gso11g2373 243 MobiDBLite consensus disorder prediction 220 243 - -
Gso11g2373 243 SUPERFAMILY Histone-fold 67 155 IPR009072 GO:0046982
Gso11g2373 243 MobiDBLite consensus disorder prediction 218 243 - -
Gso11g2373 243 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 83 146 IPR003958 -
Gso11g2373 243 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 25 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2373 Gso-Chr11 39694389 39696995 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2373 64 241 CCAAT-HAP5 Transcription Factor Family AT1G54830 47.753 1.25e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Gso11g2373 CBFD_NFYB_HMF 1.4e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2373 K08066 - gmx:100807046 496.893