Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2367 ATGGCAAATTTCACTTCTTTTTCTTCATCTCTGACACACATTCCACCCATTTCAGCTCCTTCTTCTTCTGCAGCTTTCGACGATTCTTCCGAAGACTCCTGCAGTATATGCTTAGAGCCCTTCAGCGTTCATGACCCATCTACTGTCACCTGTTGCAAACATGAATATCATCTGCATTGCATTATTGAATGGTCACAAAGAAGCAAAGAGTGCCCAATCTGTTGGCAATCACTTGCTTTGAAAGATCCTGCCAGCCAAGAGCTTCTAGCTGCAGTGGAAGATGAGAAATGCATGAGATCAAGAAACATTGCTAATTCTCGTGCCCCCCTTGGACAACTTAATGAAAGCCACGATGATTCTTGCTCAGATGACTCTGATTTTGATGATCAGATTATGAAGCGCCTAGTTTCTGCTGCAAGAAGAGCTCATTTTGTTCAGAGACAGGAAAGGAAGAGATCACCTAGTGCTGGTCCATCAGAGGCTCTTGGTGTTAACTCTTCCATGCATGTTTCTGAGGTGCAAACAACTCTTACAACTTCATCATCTGGGGGTAGTTTGCCAGCTTCTGGTGTACCATCTACTGTTAGCATTCAACCTCCAGCACTAAATACTACTCCTGAGAGTGCAAGGAGACCAAACACTTCTGAGATTTCCTTCCCTGAGTCCTTCAAATCAAAGTTTTCTGCTGCTTCAGCCAGATATAAGGAATCAATTTCAAAAAGTACGCTTGGTCTTAAAGAGAAGTTACTTGCTCATAATGTCTCGGTTAAAGAGCTGAGTAAAGGTGTTCAGCGCGAGATGAATGCAGGCATTGCTGGAGTTGCACGGATGATTGAACGCCTTGATCTTAGCTCAAAACGGTCCAGTGCTCCTCTCATTGCTGTCCATAGTGTGGCTACTTCAGACTTCCCTTCTTCAGGGAAGTCTGTTGAAGAGAATGGCATTGGGGGTTCTCCTAGTAAAGAGAATGGAGGTGCAGTTCATGATGTTAGTTCAGATGTTCCCCCACTTGTTACTAACATGCAATCTTTTCGAACAAAAACTCCTCCATTTCTTCAGAGTGGACATGGAATGGTATGA 1080 0.438 MANFTSFSSSLTHIPPISAPSSSAAFDDSSEDSCSICLEPFSVHDPSTVTCCKHEYHLHCIIEWSQRSKECPICWQSLALKDPASQELLAAVEDEKCMRSRNIANSRAPLGQLNESHDDSCSDDSDFDDQIMKRLVSAARRAHFVQRQERKRSPSAGPSEALGVNSSMHVSEVQTTLTTSSSGGSLPASGVPSTVSIQPPALNTTPESARRPNTSEISFPESFKSKFSAASARYKESISKSTLGLKEKLLAHNVSVKELSKGVQREMNAGIAGVARMIERLDLSSKRSSAPLIAVHSVATSDFPSSGKSVEENGIGGSPSKENGGAVHDVSSDVPPLVTNMQSFRTKTPPFLQSGHGMV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2367 359 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 338 - -
Gso11g2367 359 MobiDBLite consensus disorder prediction 159 216 - -
Gso11g2367 359 ProSiteProfiles Zinc finger RING-type profile. 34 74 IPR001841 -
Gso11g2367 359 SMART ring_2 34 74 IPR001841 -
Gso11g2367 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 89 IPR013083 -
Gso11g2367 359 MobiDBLite consensus disorder prediction 142 216 - -
Gso11g2367 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 338 - -
Gso11g2367 359 Pfam Ring finger domain 32 74 IPR001841 -
Gso11g2367 359 MobiDBLite consensus disorder prediction 302 334 - -
Gso11g2367 359 SUPERFAMILY RING/U-box 27 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2367 Gso-Chr11 39653551 39656617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2367 28 82 C3H Transcription Factor Family AT4G00335 45.455 5.85e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2367 K19043 - gmx:100805449 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0890 15 8264485 8267595 Gso11g2367 11 39653551 39656617 GST