Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2357 ATGATGCAGCAGCCAGGACCCGGCATGGCACCTCCCACCATGGGCCAGCAGCCGCCGCAACAGTACCAGCAGCCTCCGCCGCAGCAGCAGCAACCCTACGTCATGATGCCGCCGCAGGCCCAGGCCCCGCAGGCCATGTGGGCCCCCTCCGCCCAGCCTCCGCCTCAGCAGCAGCCCGCCAGCGCCGACGAGGTCCGAACCCTCTGGATCGGGGATCTGCAGTACTGGATGGACGAGAACTATCTCTATACCTGCTTTGCTCACACCGGCGAGGTTACATCGGTTAAAGTAATTCGAAACAAGCAAACTAGTCAATCTGAAGGTTATGGGTTTATTGAGTTTAATAGTCGTGCTGGAGCTGAGAGAATTCTTCAAACATATAATGGGGCAATAATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAACTTTTAGTGCTGGTGAGAGGTCGCGCCACGACGATTCTCCAGATTACACCATATTTGTTGGTGACTTGGCTGCAGATGTTACTGATTATCTTCTTCAGGAGACATTTAGGGCTCGTTATAACTCGGTGAAGGGTGCAAAAGTTGTCATTGATAGGCTAACTGGCCGGACCAAGGGATATGGCTTTGTAAGGTTTTCAGATGAGAGTGAGCAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGAGGATTGGACCCGCCTCTAATAAAACCCCCACCACTCAGTCCCAGCCCAAAGCTTCATATCAGAATTCTCAACCTCAAGGTTCACAGAATGAGAATGATCCAAATAATACAACTATTTTTGTTGGTAATTTGGATCCTAATGTCACTGATGATCATCTGAGGCAAGTTTTCAGCCAGTATGGAGAATTAGTGCATGTGAAGATTCCAGCAGGCAAGCGATGTGGGTTTGTCCAATTCGCAGACAGGAGCTGTGCTGAAGAGGCACTTCGGGTGTTGAATGGGACCCTGTTGGGTGGTCAAAATGTTCGTCTTTCATGGGGTCGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGGTGCTGGTTCTGGTGGTGGATACTATGGGTATGCTGCACAAGGTTATGAAAATTATGGGTATGCTCCTGCTGCTGGACAGGATCCCAACATGTATGGCAGTTATCCGGGGTATCCTGGTTACCAACCACCTCAGCAACAGCAACAAATAGGATATAGTTGA 1230 0.5033 MMQQPGPGMAPPTMGQQPPQQYQQPPPQQQQPYVMMPPQAQAPQAMWAPSAQPPPQQQPASADEVRTLWIGDLQYWMDENYLYTCFAHTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAGAERILQTYNGAIMPNGGQSFRLNWATFSAGERSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGAGSGGGYYGYAAQGYENYGYAPAAGQDPNMYGSYPGYPGYQPPQQQQQIGYS* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2357 409 CDD RRM2_SECp43_like 159 238 - -
Gso11g2357 409 CDD RRM1_SECp43_like 67 147 - -
Gso11g2357 409 MobiDBLite consensus disorder prediction 234 275 - -
Gso11g2357 409 CDD RRM3_NGR1_NAM8_like 268 339 - -
Gso11g2357 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723
Gso11g2357 409 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 20 406 - -
Gso11g2357 409 SUPERFAMILY RNA-binding domain, RBD 65 239 IPR035979 GO:0003676
Gso11g2357 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 66 146 IPR000504 GO:0003723
Gso11g2357 409 SMART rrm1_1 270 337 IPR000504 GO:0003723
Gso11g2357 409 SMART rrm1_1 161 235 IPR000504 GO:0003723
Gso11g2357 409 SMART rrm1_1 67 142 IPR000504 GO:0003723
Gso11g2357 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Gso11g2357 409 MobiDBLite consensus disorder prediction 388 409 - -
Gso11g2357 409 SUPERFAMILY RNA-binding domain, RBD 255 367 IPR035979 GO:0003676
Gso11g2357 409 MobiDBLite consensus disorder prediction 1 63 - -
Gso11g2357 409 Gene3D - 9 155 IPR012677 -
Gso11g2357 409 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 20 406 - -
Gso11g2357 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Gso11g2357 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 68 133 IPR000504 GO:0003723
Gso11g2357 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 225 IPR000504 GO:0003723
Gso11g2357 409 Gene3D - 159 235 IPR012677 -
Gso11g2357 409 MobiDBLite consensus disorder prediction 11 33 - -
Gso11g2357 409 MobiDBLite consensus disorder prediction 229 275 - -
Gso11g2357 409 Gene3D - 242 378 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2357 Gso-Chr11 39577899 39582211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2357 67 365 Eukaryotic Initiation Factors Gene Family AT2G23350 25.658 1.93e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2357 - - gmx:100801562 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0899 15 8350397 8354709 Gso11g2357 11 39577899 39582211 GST
Gso7g2199 7 45704413 45708297 Gso11g2357 11 39577899 39582211 PCT
Gso17g0118 17 1094612 1098743 Gso11g2357 11 39577899 39582211 PCT