Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2345 ATGAGTATTGTGTATAGTCATGCTGTGAAGTACTCTCGAGGGGAGACAAGGATGAACCCAGAAATGGATTCAAATATTGGTCAACATTGTCATCAACAAAATTCTGGACTAATGAGATACCGTTCTGCCCCAAGCTCATTGCTCACAAGCCTTGTGAACAACAACAACAACAACAATGGTTATGTCAATGGTGAATCTTTCAGAAGTGAGCATAATCATCATCGTCATCAGCAGCAGCAGCAGCAGCATTATCCTCCCTCTACAAGCTCTGAAATGGAAAACATGTTGGCCAAGTTGATTTCTTCCAACAATTCTGAGCCTTTGCAAATGAAGGAAGAAGCAGGGGACTCTGTTTCACAACCACCACAACAACACAATGGTTACTCTTATGGGTCTTCACCTCAGATGATGTACCAAACTCAGCAAATTCAAGGCTTGCCTATACCAAATGGTTCTTTAGGGGCTTCAGGGAGTGCTTTTGATGGCTCATTCAGTGCAGTAAATTCCCTTGCTTCACAGAATTCCACACAACCTAAAATGGGTGCTTCCACCAATTGCAACAATCTCATTAGACAAAAGAGTTCTCCTGCTGGTTTTTTCTCCAATTACTCAGTTGATAATGCAGCATTGAGAGATGTGGCAAGTTTTAGGGGCTGTGATGTCTCAAATGGACAAGCTATTACATCCTCTAGTGGATTGCATGGTACTTTGAACTTCTCATCTAGGCCATCCTCTTGCTCCACCCGGATGCCACAGATTGCTGAAAATGGAAATGAAGATGTGGAAGCAAATTGTGTTGAAAGTAGAAACCTGAGAAATGACAATATCAACAACACTAAATGTTACATGCCTAGTTTCACCACTGACTTCTGGGATGGTTCTGCATTCAGTGCCTCCAGAACAGCTAGTAACAGTGGTGAAATCTCATTTTCCACTTCAAAGGCTATGGATATTCAGGATGAAGATTTTGGATACCAAAAAGTTGGTTTGACCCACCATTTGAGTCTGCCTGGCTCTTCCAGTAGGATGGCTACAATGGAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCTAGAAGTATTGCTGAAAGGGAAAGGAGAACACGAATTAGCGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACTGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACTTGCAGAAACAAGTTAAGATTCTCAGAGATACTAGGGCAAAATGCACTTGTACAAGCAATCAGAAGCACTGA 1317 0.4176 MSIVYSHAVKYSRGETRMNPEMDSNIGQHCHQQNSGLMRYRSAPSSLLTSLVNNNNNNNGYVNGESFRSEHNHHRHQQQQQQHYPPSTSSEMENMLAKLISSNNSEPLQMKEEAGDSVSQPPQQHNGYSYGSSPQMMYQTQQIQGLPIPNGSLGASGSAFDGSFSAVNSLASQNSTQPKMGASTNCNNLIRQKSSPAGFFSNYSVDNAALRDVASFRGCDVSNGQAITSSSGLHGTLNFSSRPSSCSTRMPQIAENGNEDVEANCVESRNLRNDNINNTKCYMPSFTTDFWDGSAFSASRTASNSGEISFSTSKAMDIQDEDFGYQKVGLTHHLSLPGSSSRMATMEKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKILRDTRAKCTCTSNQKH* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2345 438 CDD bHLH_AtbHLH_like 371 424 IPR045239 -
Gso11g2345 438 Pfam Helix-loop-helix DNA-binding domain 372 417 IPR011598 GO:0046983
Gso11g2345 438 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 26 436 - -
Gso11g2345 438 SMART finulus 372 422 IPR011598 GO:0046983
Gso11g2345 438 MobiDBLite consensus disorder prediction 54 92 - -
Gso11g2345 438 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 436 - -
Gso11g2345 438 MobiDBLite consensus disorder prediction 108 133 - -
Gso11g2345 438 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 366 416 IPR011598 GO:0046983
Gso11g2345 438 Gene3D - 368 437 IPR036638 GO:0046983
Gso11g2345 438 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 429 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2345 Gso-Chr11 39456473 39460516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2345 28 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.175 5.58e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2345 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2345 - - gmx:100795896 821.231