Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2338 ATGACAGATCCTCAGTCCAATTTGTTCCATGAATGGTTCAACTTCATGCTCCTCCATCCTCACTACTCCTCCTCTTCGCAATCCAATTACCCTCTTGCTAATAATTACTCAAACAACAACAGGTTTGGAATTCAATTACAACAAGGAGCACCCTCATCTTCATCTTCATCTTCATCTTTCTATGCAGCTCCTCCTTCTTCCCCTCCTCTTAGAGTGGCCCTTCCTCTGATCAACAAGATAAGCCTCAAAAGTAGTGAGCAGCACCAACAAAATGAAACCTCCTCAAATGTTTTAGAGGAGAAAGAAGAGGATGAGAAGAAAGTGGACAACAACAACAAACATCATGAGAGTGGTGAAGATGCTGATGAAGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGGATACTTCCTCTTCTTCTGATCTGGGGCCACCAAAGGTGGTCTCGACAACTTGTATGGAAATTGGTGAAAAAGGGGAAGTGAACATGATTTCTGAACACCCTTTGGATCATAGATTGAACAAGGGTCAGTATTGGATTCCCACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCCCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCTGATTCTCTAAAAGGAACACAACCAACAGCTATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTTCAAACACATTACAAGAGAAAGCATGGCATAAAGCCCTACATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACTCATGAGAAGAACTGTGGCAAAATATGGTACTGTTTATGTGGATCTGATTTCAAACACAAAAGGTCCCTAAAAGACCACATCAAGGCCTTTGGCTTTGGCCATGGATCTTTTGGCATTGATTGCTTACAAGAAGAAGATGAAGCAGCCTCTGATATTGAACATGATGGAGAGAGTTCAATGTGA 1074 0.4264 MTDPQSNLFHEWFNFMLLHPHYSSSSQSNYPLANNYSNNNRFGIQLQQGAPSSSSSSSSFYAAPPSSPPLRVALPLINKISLKSSEQHQQNETSSNVLEEKEEDEKKVDNNNKHHESGEDADEETVTVALHIGLPRMDTSSSSDLGPPKVVSTTCMEIGEKGEVNMISEHPLDHRLNKGQYWIPTPSQILIGPTQFPCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGFGHGSFGIDCLQEEDEAASDIEHDGESSM* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2338 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Gso11g2338 357 SUPERFAMILY beta-beta-alpha zinc fingers 192 218 IPR036236 -
Gso11g2338 357 MobiDBLite consensus disorder prediction 45 64 - -
Gso11g2338 357 Pfam C2H2-type zinc finger 196 215 - -
Gso11g2338 357 ProSitePatterns Zinc finger C2H2 type domain signature. 198 218 IPR013087 -
Gso11g2338 357 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 352 - -
Gso11g2338 357 Gene3D Classic Zinc Finger 258 329 - -
Gso11g2338 357 Gene3D Classic Zinc Finger 195 218 - -
Gso11g2338 357 SUPERFAMILY beta-beta-alpha zinc fingers 264 300 IPR036236 -
Gso11g2338 357 PANTHER ZINC FINGER PROTEIN WIP2 1 352 IPR043584 GO:0003700|GO:0010468
Gso11g2338 357 MobiDBLite consensus disorder prediction 83 124 - -
Gso11g2338 357 MobiDBLite consensus disorder prediction 45 65 - -
Gso11g2338 357 MobiDBLite consensus disorder prediction 95 124 - -
Gso11g2338 357 SMART c2h2final6 280 300 IPR013087 -
Gso11g2338 357 SMART c2h2final6 196 218 IPR013087 -
Gso11g2338 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 300 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2338 Gso-Chr11 39384660 39387804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2338 1 350 C2H2 Transcription Factor Family AT3G57670 52.368 8.46e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso11g2338 zf-C2H2_6 2.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2338 - - gmx:100799060 727.243