Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2334 ATGAGGAAACCTGATCTGATGGCCAACAAGGACAAAGTGAACAACAACATAAAGAGCAAGTTGAGAAAAGGGTTGTGGTCACCAGATGAAGATGAGAGGCTCATAAGGTACATGCTCACAAATGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGCAAAAGTTGCCGTCTTCGTTGGATCAATTACTTGAGACCTGACCTCAAGCGTGGTGCATTTTCGCCCCAAGAGGAAGATCTCATCGTTCATTTGCACTCCATTCTTGGCAATAGGTGGTCTCAGATTGCAGCACATCTCCCTGGCCGCACAGACAATGAGATTAAGAATTTCTGGAACTCCACATTGAAGAAAAGGTTGAAAACAAACACTTCTACTCCCTCACTAAACAACAGCACAGGCTCATCAGAGTCTAATAAGGATGTTTTGAGTGGGATCATGCCCTTTAGTGAACATGACATCATGACCATGTGCATGGATTCCTCTTCTTCCATATCATCCATGCAAGCAACGGTTTTGCCTGACCAATTTGACCCTTTTTCCATGTTGGCAAATAATCAGTGTGACATGACTAATGTTTCAGCAGATTTTCCCAACTTGACTCAAATTGGCATGGTAGAGGGGCATGAAGGGAATTATGGGATATTGGAGCCAAATAAAATGGGGTTAGGAAGAGATTTCTCCCTTCCTTCACTAGAAAGTAGAAGCATTGAAAGCAATAGTGTCCCAATTGATGTGAAAAGCCATAACAACCACTTCAATTATGGTTCCTTCAATCACACTGATAAAATTCAGGGCTCCAAAGTAGAGGACTTAATTGAGTTTGGAAATCATGGCCAAGGGGAGGATTTAAAAATGGGAGAGTGGGATTTGGAGAATTTGATGCAAGACATAACCTCTTTTCCTTTCCTTGAGTTTTAA 936 0.4231 MRKPDLMANKDKVNNNIKSKLRKGLWSPDEDERLIRYMLTNGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAAHLPGRTDNEIKNFWNSTLKKRLKTNTSTPSLNNSTGSSESNKDVLSGIMPFSEHDIMTMCMDSSSSISSMQATVLPDQFDPFSMLANNQCDMTNVSADFPNLTQIGMVEGHEGNYGILEPNKMGLGRDFSLPSLESRSIESNSVPIDVKSHNNHFNYGSFNHTDKIQGSKVEDLIEFGNHGQGEDLKMGEWDLENLMQDITSFPFLEF* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2334 311 CDD SANT 26 70 IPR001005 -
Gso11g2334 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 125 IPR017930 -
Gso11g2334 311 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Gso11g2334 311 Gene3D - 77 148 - -
Gso11g2334 311 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Gso11g2334 311 PANTHER MYB DOMAIN PROTEIN 55 1 311 - -
Gso11g2334 311 MobiDBLite consensus disorder prediction 127 146 - -
Gso11g2334 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 70 IPR017930 -
Gso11g2334 311 Gene3D - 20 76 - -
Gso11g2334 311 CDD SANT 78 121 IPR001005 -
Gso11g2334 311 SMART sant 75 123 IPR001005 -
Gso11g2334 311 SMART sant 22 72 IPR001005 -
Gso11g2334 311 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Gso11g2334 311 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Gso11g2334 311 PANTHER TRANSCRIPTION FACTOR MYB83 1 311 - -
Gso11g2334 311 SUPERFAMILY Homeodomain-like 21 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2334 Gso-Chr11 39307352 39309836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2334 1 311 MYB Transcription Factor Family AT3G08500 47.399 5.10e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso11g2334 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2334 K09422 - gmx:100797469 624.394