Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2331 ATGAAATCGCTAACTGTTAACACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATATTGAAGGCTTCAAGGTCCTTTTAGAGAAGGATTCTTCTACGATCAATGAGGTTGGGCTCTGGTATGGCCGGCAAAACGGATCAAAGCAATTTGTTCTTGAGCACAGAACCCCTTTGATGGTTGCTGCCACTTATGGTAGCATTGATGTTATGAAGATGGTACTTTTGTGCCCCGAGGCAGATGTGAATTTCGCGTGTGGGGCGAACAAAACCACTGCCCTCCACTGTGCTGCTTCTGGTGGGTCTACCAAGGCTGTTGATGCCGTCAAGCTTCTTTTATCGGCCGGGGCCGATGTCAATTGCGTGGATGCAAATGGGAATCGCCCTATTGATGTGATTGCTGTTCCTCCCAAGCTGCAAGGTGCGAAAGCCGTTCTTGAGGAACTTCTTTCGGACAATGCTTCTGATGTGTCTGTTGGTGAATTCTCTGTCCCGGTGTCTGTTAATTCTTCCAGTCCGGGTTCTCCTGCCCATTCGTCGAATGGGATGCCGTACACTCCTTCGGTTTCACCGCCATCCCCCGTGGCTGCAAAGTTTACTGATGCAGCTATTTGCTCTTTGTCGGAGAAGAAGGAATACCCGATTGATCCATCGCTGCCTGATATAAAGAACAGTATATATGCGACTGATGAGTTTCGGATGTTTTCGTTCAAGGTGAGACCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCTTTTGTTCATCCCGGAGAGAATGCTCGGAGGAGAGACCCCAGGAAGTTCCATTACAGCTGTGTGCCGTGCCCTGATTTTAGAAAAGGGGCTTGCAGGCGTGGAGACATGTGTGAATATGCTCATGGGGTGTTTGAGTGCTGGCTGCACCCGGCTCAGTATCGGACACGCCTCTGCAAAGATGGCACCAGTTGCAATCGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAGCTTCGTCCGCTGTATGTGTCCACTGGATCTGCTGCCCCTTCGCCCCGTTCATCTGCTTCAGGTCCTAATGTCATGGACATGGCTGCTGCCATGAGCCTTTTTCCAGGATCGCCTTCATCGGGCTCTTCCATGTCGCCGTCCCACTTTGGGCAGCCAATGTCCCCATCTGCAAATGGCATGCCACTGTCTTCTGCTTGGGCTCAGCCAAATGTGCCGGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGATTGAGGTCTTCCCTAAGTGCTCGTGACATTCCACCAGAAGACTTGAACATGATGTCTGATCTTGATGGCCAGCAGCAGCACCATCTGAATGACTTGAGCTGTTACATACAGCCTCGCCCCGGTGCCAGTTCTGTGAGTAGATCTGGTCGGTCCAAGACCCTAACTCCATCAAATCTGGAAGAGCTCTTTTCTGCTGAGATTTCTTTGTCTCCCCGGTATTCTGATCCAGCAGCCGGTTCTGTGTTTTCCCCTACTCACAAATCAGCTGTTCTCAATCAGTTTCAACAGCTCCAAAGTATGTTATCACCTATAAATACTAATTTGCTGTCTCCTAAGAATGTTGAGCATCCTCTTTTTCAGGCTTCTTTTGGTGTCTCTCCTTCTGGAAGGATGTCACCAAGAAGTGTTGAACCAATCTCTCCAATGAGTGCTCGTTTATCTGCATTTGCTCAGCGAGAGAAACAGCAGCAACAGCTGCGCAGTGTTAGTTCAAGAGACCTTGGTGCCAACAGTCCTGCCTCACTTGTTGGCTCCCCTGCAAACCCTTGGTCAAAGTGGGGTTCTCCTATTGGGAAAGCTGATTGGTCAGTAAATGGAGACTCCCTTGGTCGTCAGATGCGAAGATCATCCTCGTTTGAGCGCAAGAACAATGGGGAAGAGCCTGATCTCTCTTGGGTCCAATCTCTGGTGAAGGAGTCCCCACCTGAGATGATCAAAGAGAAGTTTGCATCTCCTATGCCTACTGCATCTGCTGATGGACCGAATTCAAATTCCCAAATTGAATCCATTGACCATTCTGTTTTAGGAGCCTGGCTTGAGCAAATGCAGCTGGATCAGCTTGTAGTCTAG 2106 0.49 MKSLTVNTEDSFSSLLELASNNDIEGFKVLLEKDSSTINEVGLWYGRQNGSKQFVLEHRTPLMVAATYGSIDVMKMVLLCPEADVNFACGANKTTALHCAASGGSTKAVDAVKLLLSAGADVNCVDANGNRPIDVIAVPPKLQGAKAVLEELLSDNASDVSVGEFSVPVSVNSSSPGSPAHSSNGMPYTPSVSPPSPVAAKFTDAAICSLSEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAAPSPRSSASGPNVMDMAAAMSLFPGSPSSGSSMSPSHFGQPMSPSANGMPLSSAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNMMSDLDGQQQHHLNDLSCYIQPRPGASSVSRSGRSKTLTPSNLEELFSAEISLSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNLLSPKNVEHPLFQASFGVSPSGRMSPRSVEPISPMSARLSAFAQREKQQQQLRSVSSRDLGANSPASLVGSPANPWSKWGSPIGKADWSVNGDSLGRQMRRSSSFERKNNGEEPDLSWVQSLVKESPPEMIKEKFASPMPTASADGPNSNSQIESIDHSVLGAWLEQMQLDQLVV* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2331 701 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 1 699 - -
Gso11g2331 701 MobiDBLite consensus disorder prediction 568 597 - -
Gso11g2331 701 Gene3D - 274 337 - -
Gso11g2331 701 MobiDBLite consensus disorder prediction 173 192 - -
Gso11g2331 701 SUPERFAMILY Ankyrin repeat 6 144 IPR036770 -
Gso11g2331 701 SMART c3hfinal6 309 332 IPR000571 GO:0046872
Gso11g2331 701 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gso11g2331 701 MobiDBLite consensus disorder prediction 568 601 - -
Gso11g2331 701 PANTHER UNKEMPT FAMILY MEMBER 1 699 IPR045234 -
Gso11g2331 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 279 299 IPR000571 GO:0046872
Gso11g2331 701 Gene3D - 2 175 IPR036770 -
Gso11g2331 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Gso11g2331 701 SMART ANK_2a 10 40 IPR002110 GO:0005515
Gso11g2331 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Gso11g2331 701 ProSiteProfiles Zinc finger C3H1-type profile. 279 301 IPR000571 GO:0046872
Gso11g2331 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Gso11g2331 701 PRINTS Ankyrin repeat signature 58 73 IPR002110 GO:0005515
Gso11g2331 701 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Gso11g2331 701 MobiDBLite consensus disorder prediction 173 189 - -
Gso11g2331 701 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Gso11g2331 701 MobiDBLite consensus disorder prediction 370 395 - -
Gso11g2331 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2331 Gso-Chr11 39272185 39275878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2331 9 698 C2H2 Transcription Factor Family AT5G12850 55.163 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso11g2331 Ank_2 4.3e-10 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2331 - - gmx:100791328 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g2331 11 39272185 39275878 Gso15g2259 15 51461770 51466082 PCT