Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2324 ATGAGTTATGCTGATCAAGAAAATGATTCACTGAGTGCTCTTTATGAGGTTTCATTGAGAGGTAATGTATCTGAGTTAGACACTCTAATAGGGAGAGACCCTCTTATCCTACACAAGCTTCCATTAACAACCTTCACTGAAACTCCCTTACACATATCAGCTTTACTTGGCCACCTTGATTTCACAAAGTCTCTTCTCAGACACAAACCTCAACTTGCCCTTGAGTTGGACCATTCCAAACGCACCCCTCTTCATCTAGCTTCAGCACAAGGCCATGTAGAGATTGTCCATGTGTTGTTGCAAACATATCATGAACATGCTTGTTTGATGAGTGATCAAGATGGAAGAATTCCTATTCACTATGCAGCTATGAGAGGACGAACAGAAATAGCAAGACAACTGATTATGGCAAAGCCTGAGTCATTGATGGTGCTTGATGGATCAGGAAAAACTGTGTTGCACCTATGTGTTGAGCACAATCACTTGGAGACCTTGAAAACATTGGTGCAAGTGCGAGATCTTAGTGGTAATGATTTTCTAAACAAAACAGACTTGCATCATGGGAATACCATTTTGCACTTCGCTGTTACCTTGAAGCAAGTTGAGACTATAAGGTACTTGCTTTCGATACCCAAAATAAGAGAAGAAGCAAGCATTGAGAATAAGATGGGTTGTACTGCTTTGGACATGTTAGTGGATGCTGTCATAATGAACAATGGAATGAACCAAACACATTCACTACCATCACTTAATCCAAATGAAAAGTATTGGACAAAGAATTTCAAACTGGGTAAAAGGTTCTTACAACATCAGGGTGAAAGGCTGGAAGAAATGAGAGGGATGCTTAGTGTGGTAGCTACAATGATCTCAGCCATGACCTTTAATGCTGTAATGAACCCTCCAGGTGGTGTTATACAAGCAAATGGTTCAGACTTACGTAGTTGGAAAAACATGTTAAGTAATAATGTGAAGGATGCTATGGAATTACAACCTGGGAGAGCAGTATTCTTAACTACTCAAGAATCTGACTTTGAAAGTTTTGTAATGTTCAACTCCATCTCTCTGGCTGCATCACTTAGTATTACTCTCTTACTTGTGAGTGGAGTCCCCTTAAAGAATGAAGTCACCATGGGGATCTTATCAATAGGAACGTGTGTCACTCTCACATTTCTTATGCTTTCCTATTTTTTCGGAGGGTTCATGTTGGGTTTGAAGTCAGTTAATCACGTATTTTTTTTTTGGCTTTATTTTTGGCTTGGACTTCTTGGGCTAATTGTTGTCTTCACCATGATCCGCGTAATTTCTTGGCTAGTAAAAGTTATCAAACATGGATAA 1335 0.3948 MSYADQENDSLSALYEVSLRGNVSELDTLIGRDPLILHKLPLTTFTETPLHISALLGHLDFTKSLLRHKPQLALELDHSKRTPLHLASAQGHVEIVHVLLQTYHEHACLMSDQDGRIPIHYAAMRGRTEIARQLIMAKPESLMVLDGSGKTVLHLCVEHNHLETLKTLVQVRDLSGNDFLNKTDLHHGNTILHFAVTLKQVETIRYLLSIPKIREEASIENKMGCTALDMLVDAVIMNNGMNQTHSLPSLNPNEKYWTKNFKLGKRFLQHQGERLEEMRGMLSVVATMISAMTFNAVMNPPGGVIQANGSDLRSWKNMLSNNVKDAMELQPGRAVFLTTQESDFESFVMFNSISLAASLSITLLLVSGVPLKNEVTMGILSIGTCVTLTFLMLSYFFGGFMLGLKSVNHVFFFWLYFWLGLLGLIVVFTMIRVISWLVKVIKHG* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2324 444 ProSiteProfiles Ankyrin repeat profile. 114 135 IPR002110 GO:0005515
Gso11g2324 444 Pfam Domain of unknown function 273 400 IPR026961 -
Gso11g2324 444 Pfam Ankyrin repeats (3 copies) 35 102 IPR002110 GO:0005515
Gso11g2324 444 Pfam Ankyrin repeats (3 copies) 114 170 IPR002110 GO:0005515
Gso11g2324 444 ProSiteProfiles Ankyrin repeat region circular profile. 79 101 - -
Gso11g2324 444 PANTHER ANKYRIN REPEAT-CONTAINING PROTEIN ITN1-LIKE 19 432 - -
Gso11g2324 444 ProSiteProfiles Ankyrin repeat region circular profile. 114 135 - -
Gso11g2324 444 ProSiteProfiles Ankyrin repeat profile. 79 101 IPR002110 GO:0005515
Gso11g2324 444 SUPERFAMILY Ankyrin repeat 13 231 IPR036770 -
Gso11g2324 444 SMART ANK_2a 79 108 IPR002110 GO:0005515
Gso11g2324 444 SMART ANK_2a 148 181 IPR002110 GO:0005515
Gso11g2324 444 SMART ANK_2a 187 216 IPR002110 GO:0005515
Gso11g2324 444 SMART ANK_2a 114 144 IPR002110 GO:0005515
Gso11g2324 444 SMART ANK_2a 45 74 IPR002110 GO:0005515
Gso11g2324 444 Gene3D - 1 247 IPR036770 -
Gso11g2324 444 ProSitePatterns EF-hand calcium-binding domain. 173 185 IPR018247 -
Gso11g2324 444 PANTHER HOMEOBOX PROTEIN WARIAI 19 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2324 Gso-Chr11 39182824 39186152 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2324 21 311 Miscellaneous Gene Families AT4G10720 28.931 1.80e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2324 - - gmx:100796407 854.358