Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2322 ATGGAGTCCTCTGTTGATGCATTAGCTTCAAAACGCTCTCGTTCAAGTGGATTTTCCCCTGACCCTGACAGAGGCAAAAGACAGAAGTTATCAAATGTTGTGGAGCACGGGAATCCATTCGCAGTTACTGATGTTCTGGATCGTATAGAGCATGGAAAATATGGAAGTGTCACGAAGGATATAGAGGCCCTTTTTGCCCGAAGAATGAAGGTACTTGGACCTTACTTAGCAAAGTATCCCAAACTTAATCAATTGATCCATGCGGTAATCGACCGCGATGAAGAAACTCTTAAGTCAGAAGATCAACAAGTTACTGGTTTGACACATCAAAATGTCATAGATTTGGAAACTCCTAAGTTAGAAGTTCAACAGATTACTGGTTTGACACTTCAAAATGTCATAGATTTGGAGGGGGAAAACACTGAGAAGGATGTTCATGCAGCACAAATTCATGGTTTGATTCACATTGATTCAGATGAGGAAGATGATAGAGATAAAAAATCTATTGTTCCATATGAAGCTTCAGATGAGAAAGATGGTAGAGATAAAAAAATTATTGTTCCATATGAAGCTTCAGATGAGGAAGATGGTAGAGATAAAAAAATTATTGTTCCATATGAAGCTTCAGATGAGGAAGATGGTAGAGATAAAAAAATTATTGTTCCATATGAAGCTTCAAATGAGGAAGATGATAGAGACAAAAAATCTTTTGTTGCTTTTCATGAAGTTGTGTCGCCAAGACTAGTTGCACCATCTCCTGCGTCTAAGACGGTTGAGTACCACACTCCCATTCCTTACCATGGAGAAACTGAAGATCTAAAATTTGAGACAAGTATATCTGGAAAAGATAACACTAGGGGAGATAAAGGTGTTTATATTGGTGTACAGGAGGTAGAGGATCATCAGGGTGATACTGCAGATGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATAGAATGTTCCAAAGATACTTACGTGAATCCTCTGCCAGATGAAGAAGTAAAAGAAGATGAGGACTGTGATCATTCTTTTATTTTAAAAGATGATCTTGGCTATGTTTGTCGTGTTTGTGGCATTATTGACCGGGGAATTGAAACCATATTTGAGTTCCAGTACAAGGCTAAACGGAGCACAAGGACTTATGCATCTGATTCACGGAATACCAAAGGAAAAGCAGATGCATTTGGAATTAATGTTGCTGAAGATGATCTCATAGTAACTGAAATCTCAGCACATCCGAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGCTAGAAATCTTGTGGGTGACGATCCTGGTGGGTGCATCTTGGCCCATGCTCCTGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTGGGAAAGTATCCTAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTATCAACATGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATTCCTCTATATGACTTTTACACAGTGAAGGCAGATAGTAGAAGTCAACAACTGGAAGTGTTGAAGCAATGGGTGGAGCATAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCTGTTGTCTGTGATAATGGGGCCAGCAGTGAATCTTTATCTTGCAAAAAGATTCTACTGAATGTTCCTTCAATTCTTATTTTAGATGAGGGGCACAATCCGAGGAATGAAAACACGGATATGGTACAGTCCCTTGTGGAAGTTCATACCCGTCTAAAAGTTGTACTGTCGGGAACACTTTACCAAAATCATGTCAAGGAGGTGTTTAACATCTTAAATCTTGTTCGGCCAAAATTTTTGAAGATGGAAACATCTAAGCCTATTGTGAGGCGCATTCGTAGTAGAGTTCACACACCGGGGGTGAGAAGCTTCTATGATTTAGTTGAAAACACTTTGGAGAAGGACACGCATTTTAAAACGAAAGTAGCTGTTATTCAAGATTTGCGAGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTCCTTGATGAGCTTCCTGGTCTTGTTGATTTTACTGTGGTGCTCAATCTTAGCCCTAGACAGAAGCCCGAAGTTGAAAAATTAAAAAGGTTATCTGGAAATTTTAAGAAATCTTCTGTAGGCAGTGCTGTCTATTTGCACCCTAAATTGAAACCTTTAGCTGAAAAAAGTGAAAAAGGTATATCTGATAACATGATTGATGCTCTGATAGAGAAATTGGATGTGAGAGATGGTGTGAAGTCCAAATTCTTTCTGAACATGCTAAATTTGTGTGAATCAGCTGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGCTAACTATGAAATGGAAAGGCTGGAGTCTAAAAAGAGAAATCTTTGTAATCTCTGGAGAAACAAGCTCTGAGGATCGAGAATGGTCAATGGAAAGATTTAACAACTCTCCTGATTCCAAAGTCTTCTTTGGCTCGATAAAGGCTTGTGGGGAGGGCATATCATTGGTCGGGGCATCCCGCATAATTATTTTGGATGTTCATCTCAATCCTTCTGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCAGGCCAGAAGAAGAAAGTCTTTGTGTATCGATTGGTATCTGCTGATTCTCCTGAAGAGGAAGATCACAGTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCAAGCTTTTGAAGTTGAGGAAGTTGGGGTGAAAGAGTGTGGTGATCTATTTCTTGAAAGTCCATTGTTAGGGGAGGATGTAAAAGCTTTGTATAAAAGGTGA 2862 0.391 MESSVDALASKRSRSSGFSPDPDRGKRQKLSNVVEHGNPFAVTDVLDRIEHGKYGSVTKDIEALFARRMKVLGPYLAKYPKLNQLIHAVIDRDEETLKSEDQQVTGLTHQNVIDLETPKLEVQQITGLTLQNVIDLEGENTEKDVHAAQIHGLIHIDSDEEDDRDKKSIVPYEASDEKDGRDKKIIVPYEASDEEDGRDKKIIVPYEASDEEDGRDKKIIVPYEASNEEDDRDKKSFVAFHEVVSPRLVAPSPASKTVEYHTPIPYHGETEDLKFETSISGKDNTRGDKGVYIGVQEVEDHQGDTADDDGLEDIWKEMSMAIECSKDTYVNPLPDEEVKEDEDCDHSFILKDDLGYVCRVCGIIDRGIETIFEFQYKAKRSTRTYASDSRNTKGKADAFGINVAEDDLIVTEISAHPRHMKQMKPHQVEGFNFLARNLVGDDPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVEHKSILFLGYKQFSSVVCDNGASSESLSCKKILLNVPSILILDEGHNPRNENTDMVQSLVEVHTRLKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSKPIVRRIRSRVHTPGVRSFYDLVENTLEKDTHFKTKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLSPRQKPEVEKLKRLSGNFKKSSVGSAVYLHPKLKPLAEKSEKGISDNMIDALIEKLDVRDGVKSKFFLNMLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLKREIFVISGETSSEDREWSMERFNNSPDSKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVSADSPEEEDHSTCFKKELISKMWFEWNEYCGDQAFEVEEVGVKECGDLFLESPLLGEDVKALYKR* 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2322 953 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 23 953 IPR044567 GO:0080188
Gso11g2322 953 Pfam SNF2-related domain 443 652 IPR000330 GO:0005524|GO:0140658
Gso11g2322 953 MobiDBLite consensus disorder prediction 17 31 - -
Gso11g2322 953 CDD SF2_C_SNF 751 888 - -
Gso11g2322 953 MobiDBLite consensus disorder prediction 1 16 - -
Gso11g2322 953 Gene3D - 686 940 IPR027417 -
Gso11g2322 953 MobiDBLite consensus disorder prediction 1 33 - -
Gso11g2322 953 PANTHER PROTEIN CHROMATIN REMODELING 35 23 953 - -
Gso11g2322 953 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 437 616 IPR014001 -
Gso11g2322 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 403 635 IPR027417 -
Gso11g2322 953 SMART ultradead3 419 629 IPR014001 -
Gso11g2322 953 Gene3D - 392 641 IPR038718 -
Gso11g2322 953 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 763 931 IPR001650 -
Gso11g2322 953 MobiDBLite consensus disorder prediction 156 218 - -
Gso11g2322 953 SMART helicmild6 792 877 IPR001650 -
Gso11g2322 953 Pfam Helicase conserved C-terminal domain 766 876 IPR001650 -
Gso11g2322 953 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 915 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2322 Gso-Chr11 39161823 39168154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2322 774 895 RAD5 or RAD16-like Gene Family AT5G43530 36.066 1.64e-14 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g2322 SNF2_N 2.2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2322 K10875 - gmx:100795356 1889.39