Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2321 ATGGGAAAGAAGAACAAAGTGAAGGAAAATGGAGGCAAAGAGCATTGCCCCTCGACTCTTTTTGTCTCCAACTTGCCCTATTCCTTTTCCAATTCTCAGTTGGAGGAGACGTTCAGTCAGGTTGGGCCTGTCAGGCGTTGCTTCATGGTCACTCAGAAAGGATCAGCTCAACATCGTGGTTTCGGTTATGTCCAATTTGCCGTTGAGGAAGACGCTAACCGTGCTATTGAGCTGAAGAATGGTACATCTGTTGAAGGCCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCCGTGAAGAACGACAATCAAAACCAAATCAAGCGGGCAAGACAGATGATCTCACAAAGCCAAAAGATGATGATGAAGACGGCAGATCATCTGGATCAGAGAAGAATGTTTCAGTTTCGAAGGAAGAAGAATTGCAAGTCAGTAAACAAAAAAGCACAAGGAAGCCCATGGAAATTAAAAAATCAGCTCTTTGTGATGATGTAGCAGATGAGGGTGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTTATAAATTCTGATATGGCTGAAGAAGTTCACAGCAAAGCCAAAGAGATTGGCACTGTGTGTTCAATTAAGTACCCTCTTTCAGGGAAAGATCTTGAGCAACATGGTCTCCTGCAAGATGGATGTACTTTAGATGCTTCGGCTGTGCTTTATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAACATTACATAAAAAAGAGATAGGAGGGGGAAACGTTTGGGCACGCCAACTTGGTGGAGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTATCAGAAACCTTCCTTTCAAGGCAAAAGATAATGAAATAAGAGATATGTTTTCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACAAAAGCCAGACACAGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCAGAAAAGGCCATTCAAAAGCTCAATGGATCAAAGTTTGCAAAACGACTCATAGCTGTTGATTGGGCTGTTTCAAAAAAGATATTTAGCAGTGATACAAATAATGCTCTTGCCTCAGAGAAAGGACAAAAAAACTTGAGCGATGAGGATAGTACTGATGACGATTTTGAGCTTGATGATAAAAGATCTGGTCAAGGAGATGATAGTGATACAGACTACTCTAGTGCCATGGAGGAAGAAGGCACTCCTGAAGATAATTTCGATAAGGAAGCAGACATTGCAAAAAAGGTTCTTAACAACTTGCTTACATCCTCGAGTAAAGGAACATCTGCAAACAATGATTCTATGCTGATCAAAGAAAACAAGGAGTCAAGATCTGATGAAATTGTTAAGGATGCAGATGAAAAAAATGAGTCTGGAAAGGTTTCAGGTGTTTCTAAGCCTGAAATTTCCAGCAGAAACAACTTATCAATTCCTAAGAGAACAGAAGAAGATGATTTGCAGGGAACAGTTTTTATATGTAATCTTCCCTTTGAATGTGATAACGAAGAAGTGAAACAGCGTTTTTCTGGATTTGGGGAAGTAGAATACTTTGTTCCTGTTCTCCACCAAGTTACCAAGCGACCGAGAGGGACTGGTTTTCTAAAATTTAAAACTGTAGAAGCAGCTAATACTGCAATTTCAACTGCCAGTGCTGCTTCTGGGATGGGTATTTTATTGAAAGGTAGACCATTAAAAGTTTTGAAGGCTTTGGATAAGAAATCAGCACATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCTAAGGAGGGACTTATTCTTGAGGGAACTACAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTTAAAACGCCAAGAGTTTGAAAAGAAAAAGAAGACAAAGCTTCAATCTCCCAATTTTCATGTTTCAAGAACTAGACTCATTATCTACAACTTACCCAAGTCAATGAATGAGAAAGAACTCAAGAAGCTTTGCATTGATGCAGTTATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAAATGAAAAGAAAGGAAATGTTGCTCAAGAACGCTATTCACGGGGAGTTGCCTTTGTTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAGCATCGGCCGATCGTGGAGTTTGCTCTTGATAATGTTCAAACACTTAAACTTCGGAAGGCAAAGCTACAATCTCAGCTGCAGGCTCCTCAAGATGACAACAATGCCATGGATAATGACAAACCTGGCACAGTAGAAGGTCACAAGCCTGTAAAGAACAGAAAACGAAAATCTCAAGAGCATGACAAACCAGCAATGGAATCAGCACTGAATACAAATGGTGAATTGGGTGTTGCAGTGTCAAACGGAAAATCCCCTCAAGGACACAAATCCAAAAGACAGAAAGGCAACAATAAGAGTAAAAAGGCACTGAAAGAAAATCCAGAAGCCTTGTCCATGAAGCCAAAGAATAATGAAAATGGCCAGAGCAATGGTGGTGCATCACTAGAAGGTCAAAACACTGCCACTTACTCAAATAGAAGAAAATCAGGGAACAGAGAAGATTGGGGGTTTAGAAAAAGAAAGATTCAAAACCAAGAACAAGAAGCAGGCCAAAAGGTTTCTAAGAAACGGCCTAAGAAGAATAAAGATTCAGTAGGGAAGGACGTGGGAGACAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGGTTCCCAAGAGAATGATGGAGAGAGAAAACCTTCTAAACAGCTTAGGAAATGGTTCCAATCATAG 2871 0.4075 MGKKNKVKENGGKEHCPSTLFVSNLPYSFSNSQLEETFSQVGPVRRCFMVTQKGSAQHRGFGYVQFAVEEDANRAIELKNGTSVEGRKIVVKHAMPRPPREERQSKPNQAGKTDDLTKPKDDDEDGRSSGSEKNVSVSKEEELQVSKQKSTRKPMEIKKSALCDDVADEGGCSEKQRVARTVIFGGLINSDMAEEVHSKAKEIGTVCSIKYPLSGKDLEQHGLLQDGCTLDASAVLYTSVKSARASVATLHKKEIGGGNVWARQLGGEGSKTQKWKLIIRNLPFKAKDNEIRDMFSSAGYVWDVFIPQKPDTGLSKGFAFVKFTCKQDAEKAIQKLNGSKFAKRLIAVDWAVSKKIFSSDTNNALASEKGQKNLSDEDSTDDDFELDDKRSGQGDDSDTDYSSAMEEEGTPEDNFDKEADIAKKVLNNLLTSSSKGTSANNDSMLIKENKESRSDEIVKDADEKNESGKVSGVSKPEISSRNNLSIPKRTEEDDLQGTVFICNLPFECDNEEVKQRFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTVEAANTAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNLYLAKEGLILEGTTAAEGVSASDMLKRQEFEKKKKTKLQSPNFHVSRTRLIIYNLPKSMNEKELKKLCIDAVISRATKQKPVIRQIKFLKNEKKGNVAQERYSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQLQAPQDDNNAMDNDKPGTVEGHKPVKNRKRKSQEHDKPAMESALNTNGELGVAVSNGKSPQGHKSKRQKGNNKSKKALKENPEALSMKPKNNENGQSNGGASLEGQNTATYSNRRKSGNREDWGFRKRKIQNQEQEAGQKVSKKRPKKNKDSVGKDVGDKLDMLIEQYRSKFSHKGSQENDGERKPSKQLRKWFQS* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2321 956 MobiDBLite consensus disorder prediction 757 956 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 909 950 - -
Gso11g2321 956 Gene3D - 262 403 IPR012677 -
Gso11g2321 956 Gene3D - 2 137 IPR012677 -
Gso11g2321 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 649 757 IPR000504 GO:0003723
Gso11g2321 956 Gene3D - 648 743 IPR012677 -
Gso11g2321 956 Coils Coil 740 760 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 432 484 - -
Gso11g2321 956 CDD RRM2_RBM28_like 276 352 - -
Gso11g2321 956 SUPERFAMILY RNA-binding domain, RBD 271 356 IPR035979 GO:0003676
Gso11g2321 956 SMART rrm1_1 19 92 IPR000504 GO:0003723
Gso11g2321 956 SMART rrm1_1 498 576 IPR000504 GO:0003723
Gso11g2321 956 SMART rrm1_1 650 741 IPR000504 GO:0003723
Gso11g2321 956 SMART rrm1_1 276 349 IPR000504 GO:0003723
Gso11g2321 956 PANTHER RNA BINDING PROTEIN 7 373 - -
Gso11g2321 956 PANTHER RNA BINDING PROTEIN 498 770 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 87 155 - -
Gso11g2321 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 96 IPR000504 GO:0003723
Gso11g2321 956 Gene3D - 431 594 IPR012677 -
Gso11g2321 956 MobiDBLite consensus disorder prediction 847 874 - -
Gso11g2321 956 SUPERFAMILY RNA-binding domain, RBD 18 260 IPR035979 GO:0003676
Gso11g2321 956 MobiDBLite consensus disorder prediction 400 414 - -
Gso11g2321 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 89 IPR000504 GO:0003723
Gso11g2321 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 346 IPR000504 GO:0003723
Gso11g2321 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 499 557 IPR000504 GO:0003723
Gso11g2321 956 CDD RRM3_RBM28_like 498 578 - -
Gso11g2321 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 353 IPR000504 GO:0003723
Gso11g2321 956 Coils Coil 575 602 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 446 470 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 757 772 - -
Gso11g2321 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 497 580 IPR000504 GO:0003723
Gso11g2321 956 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 7 373 - -
Gso11g2321 956 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 498 770 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 90 155 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 365 416 - -
Gso11g2321 956 SMART rrm2_1 276 349 IPR003954 GO:0003676
Gso11g2321 956 SMART rrm2_1 19 92 IPR003954 GO:0003676
Gso11g2321 956 CDD RRM4_RBM28_like 649 746 - -
Gso11g2321 956 MobiDBLite consensus disorder prediction 875 902 - -
Gso11g2321 956 CDD RRM1_RBM28_like 19 97 - -
Gso11g2321 956 SUPERFAMILY RNA-binding domain, RBD 498 727 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2321 Gso-Chr11 39147649 39155692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2321 22 98 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 9.45e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2321 K14573 - gmx:100794821 1843.94