Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2300 ATGTCACGCTCTTTATCTCTGGCTCTTGTTTTGCTGTGTCTTTACAACCTCTCTTTCTTAGAGGCAATCAATGGTGGGTTTAGTGTGGAGATGATCCACCGTGACTCATCAAGATCACCATTCTTTCGTCCCACAGAAACTCGATTCCAAAGGGTTGCCAACGCCATGCGTCGTTCCATTAACCGTGCCAATCATTTGAACCAATCTTTTGTCTTTCCAAACTCACCTAAGACCACTGTTATATCAGCTCTAGGTGAATACCTCATGAGCTATTCAGTTGGAACCCCATCACTCCAGGTCTTTGGAATTGTTGATACGGGTAGTGACATCATTTGGCTCCAATGCCAACCATGTAAAAAATGCTACAAACAAACCACTCCTATATTTGATTCTTCAAAATCCCAAACATACAAAACCCTACCTTGCCCTTCTAATACATGTCAATCTGTTCAAGGAGATCTTAGTGTGGAGACTCTCACTTTAGGCTCCACCAATGGCTCTCCTGTCCAATTTCCTGGAACTGTGATAGGATGTGGGCGTGACAATGCTATTGGCTTTGAAGAGAAAAATTCCGGCATCGTTGGCCTAGGGCGCGGACCCGTGTCCCTTATAACTCAATTGAGTCCTTCAAAAGGTGGGAAGTTTTCTTATTGTTTGGTACCAGGGCTGTCTACTGCATCTAGCAAACTCAATTTTGGAGATGCTGCAGTGGTTTCCGGGCGTGGGACCGTCTCAACCCCGTTATTCCCGCAAAATGGACTAGTATTCTACTTCCTAACCCTAGAAGCATTCAGTGTAGGACGCAATAGAATAGAGTTTGGAAGCCCTGGATCTGGTGGAAAGGGAAATATCATAATTGACTCAGGTACAACGCTCACTGTTTTGCCAAATGGTGTTTACTCAAAGTTGGAATCAGCAGTAGCAAAGACAGTGAAATTGCAGCGTGTTAGGGATCCAAATCAAGTGTTGGGTCTTTGCTACAAAGTTACACCTGATAAACTAGATGCAAGTGTACCAGTGATCACGGCACATTTTAGTGGTGCAGATGTCACTTTAAATGCTATCAACACCTTTGTTCAAGTGGCCGATGATGTAGTGTGCTTTGCTTTCCAGCCAACTGAAACTGGTGCCATCTTTGGGAACTTGGCTCAGCTAAACCTCTTGGTTGGTTATGATCTCCAAAAGAACACCGTGTCCTTTAAGCACACAGATTGCACTAAGCAATGA 1227 0.4417 MSRSLSLALVLLCLYNLSFLEAINGGFSVEMIHRDSSRSPFFRPTETRFQRVANAMRRSINRANHLNQSFVFPNSPKTTVISALGEYLMSYSVGTPSLQVFGIVDTGSDIIWLQCQPCKKCYKQTTPIFDSSKSQTYKTLPCPSNTCQSVQGDLSVETLTLGSTNGSPVQFPGTVIGCGRDNAIGFEEKNSGIVGLGRGPVSLITQLSPSKGGKFSYCLVPGLSTASSKLNFGDAAVVSGRGTVSTPLFPQNGLVFYFLTLEAFSVGRNRIEFGSPGSGGKGNIIIDSGTTLTVLPNGVYSKLESAVAKTVKLQRVRDPNQVLGLCYKVTPDKLDASVPVITAHFSGADVTLNAINTFVQVADDVVCFAFQPTETGAIFGNLAQLNLLVGYDLQKNTVSFKHTDCTKQ* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2300 408 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 4 406 - -
Gso11g2300 408 Pfam Xylanase inhibitor N-terminal 149 234 IPR032861 -
Gso11g2300 408 Pfam Xylanase inhibitor N-terminal 87 148 IPR032861 -
Gso11g2300 408 Gene3D Acid Proteases 61 232 IPR021109 -
Gso11g2300 408 CDD pepsin_A_like_plant 86 405 IPR034161 -
Gso11g2300 408 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 284 295 IPR001969 GO:0004190|GO:0006508
Gso11g2300 408 Gene3D Acid Proteases 233 408 IPR021109 -
Gso11g2300 408 PANTHER OS07G0603500 PROTEIN-RELATED 4 406 - -
Gso11g2300 408 Pfam Xylanase inhibitor C-terminal 257 401 IPR032799 -
Gso11g2300 408 ProSiteProfiles Peptidase family A1 domain profile. 87 401 IPR033121 -
Gso11g2300 408 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 102 113 IPR001969 GO:0004190|GO:0006508
Gso11g2300 408 SUPERFAMILY Acid proteases 82 405 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2300 Gso-Chr11 38903137 38904432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2300 69 407 Miscellaneous Gene Families AT1G44130 25.964 2.95e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2300 - - gmx:100791135 780.785