Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2295 ATGGAGTCTCTAGTTCTTCAACTCCATGAAATCTCAGCAGTCAAATTTGGCAATTTCAAGCTCAAATCTGGCATCTCCTCACCAATCTACATAGACCTCCGCCTTGCTATATCTTATCCTTCTGTCCTCCGGAATATTTCTCAAACCCTTATTTCCTCTGTCTCTTCCACTTCATTTGACCTTGTCTGTGGTGTCCCTTACACTGCTCTGCCCATTGCCACTTGTGTCTCTGTTACTCAGAACATCCCCATGGTCATGCGCCGCAAGGAAATAAAAGATTATGGCACTTCTAAAGCTATTGAAGGAGATTTCAAGCATGGCCAAAGTTGCTTGATAATTGAGGATCTAGTTACTAGTGGCACATCAGTTTTGGAAACTGCTGCACCACTGCGTGCCACAGGGTTGAAGGTCAGTGATGCTGTGGTTTTGATTGATAGAGAGCAAGGTGGGAGAGAGAATTTGGAGAGTAATGGAATCAAGCTGCATGCAATTCTCAAATTGACTGAAATGGTGAAAATTTTGAGGGAAAAAGGAAAGCTTGATAAGCAGATGCTAGGGGTTGTTATGAGATTCTTAGAAGAGAATCAAAAGGTCGCTGCTTTGGCAACTACAGCTAAGGTCAAGGCCTTCACATTTATGGAGAGGGCTAAGTTGTCCAAGAATCCAACAGGAAAGAGGTTGTTTGAGATAATGGCCAAGAAGGAGAGTAATCTGTGTTTGGCTGCAGATGTTGGAACTGCAGCTGAATTGCTTGAAATTGCTGACAAGGTTGGGCCTGAGATATGCTTGCTGAAAACTCACGTTGATATTTTACCTGATTTTACTCCTGATTTCGGTTCTAAGCTTCGCTTGATTGCAGAAAAACATAACTTCTTAATCTTTGAGGATCGTAAGTTTGCTGACATTGGTAACACGGTGACCATGCAATATGAAGGAGGAATCTTTCATATATTGGAATGGGCTGATATAGTAAATGCTCACATTATATCTGGTCCTGGAATTGTGGAAGGACTGAAGTTGAAGGGTTTGCCTCGTGGAAGGGGTCTATTGCTGCTTGCTGAAATGAGTTCAGCTGGTAACCTTGCCAAGGGAGATTACACCACTGCTGCGGTGAAAATTGCTGAGGATCACTCTGACTTTGTTATTGGCTTCATCTCAGTCAATCCTGCATCATGGCCTGGAGCACCCATAAATCCCTCTTTTGTTCATGCAACTCCTGGAGTTCAAATGGTGACTGGTGGTGATGCTTTAGGACAACAATATAGTACACCGCATTCTGTTGTCTATGATGGGGGTAGTGACATTATCATAGTAGGTCGTGGCATCATCAAGGCAGCAAATCCAGCTCAGGCAGCTCGCGAATACCGTCTTCAAGGATGGAATGCGTATTTGGCTAAGTGCAGCTGA 1407 0.4364 MESLVLQLHEISAVKFGNFKLKSGISSPIYIDLRLAISYPSVLRNISQTLISSVSSTSFDLVCGVPYTALPIATCVSVTQNIPMVMRRKEIKDYGTSKAIEGDFKHGQSCLIIEDLVTSGTSVLETAAPLRATGLKVSDAVVLIDREQGGRENLESNGIKLHAILKLTEMVKILREKGKLDKQMLGVVMRFLEENQKVAALATTAKVKAFTFMERAKLSKNPTGKRLFEIMAKKESNLCLAADVGTAAELLEIADKVGPEICLLKTHVDILPDFTPDFGSKLRLIAEKHNFLIFEDRKFADIGNTVTMQYEGGIFHILEWADIVNAHIISGPGIVEGLKLKGLPRGRGLLLLAEMSSAGNLAKGDYTTAAVKIAEDHSDFVIGFISVNPASWPGAPINPSFVHATPGVQMVTGGDALGQQYSTPHSVVYDGGSDIIIVGRGIIKAANPAQAAREYRLQGWNAYLAKCS* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2295 468 Hamap Orotate phosphoribosyltransferase [pyrE]. 1 224 IPR023031 GO:0004588|GO:0006221
Gso11g2295 468 SUPERFAMILY Ribulose-phoshate binding barrel 210 464 IPR011060 -
Gso11g2295 468 Gene3D - 1 207 IPR029057 -
Gso11g2295 468 TIGRFAM pyrF: orotidine 5'-phosphate decarboxylase 238 456 IPR014732 GO:0004590|GO:0044205
Gso11g2295 468 PANTHER PHOSPHORIBOSYLTRANSFERASE, OROTIDINE 5-PHOSPHATE DECARBOXYLASE 1 468 - -
Gso11g2295 468 Pfam Phosphoribosyl transferase domain 51 152 IPR000836 -
Gso11g2295 468 Pfam Orotidine 5'-phosphate decarboxylase / HUMPS family 236 455 IPR001754 GO:0004590|GO:0006207
Gso11g2295 468 Gene3D Aldolase class I 208 468 IPR013785 -
Gso11g2295 468 PANTHER OROTATE PHOSPHORIBOSYLTRANSFERASE 1 468 - -
Gso11g2295 468 ProSitePatterns Orotidine 5'-phosphate decarboxylase active site. 293 306 IPR018089 GO:0004590|GO:0006207
Gso11g2295 468 TIGRFAM pyrE: orotate phosphoribosyltransferase 8 169 IPR004467 GO:0004588
Gso11g2295 468 CDD PRTases_typeI 59 166 IPR000836 -
Gso11g2295 468 SUPERFAMILY PRTase-like 3 189 IPR029057 -
Gso11g2295 468 CDD OMP_decarboxylase_like 238 455 - -
Gso11g2295 468 SMART OMPdecase_2 237 455 IPR001754 GO:0004590|GO:0006207
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2295 Gso-Chr11 38859577 38864180 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2295 K13421 - gmx:100780481 880.167