Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2289 ATGAGAAGAAAGAGCAGGGGCAAACGTAGGCGTGCGGCATCTGCAACAACTCTGAGTCCTTCTTCCCTCTCCGCCATTCCCATTCTTTGGGATGCGTATGATACCATCTGCATTCACTGCAATAACAAAGGCGAGGAGGCCAAGGAGGATGGACTTTTGATTTGCAGCGGAAGGGGCTGCCCCGTCGCTGTCCATGCCACCTGCCTCGCCACCGGACCTAAATTTGACGGTTCCGGTAACTTCTGCTGCCCCTACTGCTGGTACAAGCGCGCCGTTGACACGTGTCGACGCCTCAGGGAGAAGGCCCTGGAAGCCAAGGGAGACTTGTCACGCTTTCTGGACAATCACGACCACGCACGTGCGGCTGCACATGTGGATCTGGTTGTTCAGGATAGTGAAGAACTCATGGAGGAAACAGGAACACAAGCACAGTCTAAAGATAATAAAGATGAGGAGGGAGAGGCACGTGTGAATCAGGTTCATGATAGGGAAGAAACTGAGACAGAACCAGAAGGGAATAAAGAAAAGGAGGGAAAGGTTCGGGATAATGAAGAACTCGTGGAAGAAAGAGAAAGAAAAACAGTGACAGAAGCACAATCTCAAGAGAATAAAGCTGAGGAGGATAAGTTTCAAGATGATAGTGAAGAACTCGTGGTGGAAACAGAAACAGAAACAGAAGTTCAGTGTGAAGAGAATAAAGAGGAGGGTAAGGTTCGGGATAGTGAAGAACATGTGGAGGAAATGGAAACAGAAACAGGAGCAGAAGCGCAACCTGAAGAGAAGAAAGATGAGGGTAAGGTTCGGGACAGTGAAAAACTCGTGGAGGAAACGCAAACGGAAACAGAAGGACAATCTGAAGAGAAGAAAGATGAGGAGGGAAAGGTGGCTGTGATGAGTAGTTCTGTGAGTGAGACCTATGATTCGGATTCTGTGGCTGTATCGATGAAGAAAAGGAAGGATAAGAAGAAGAAGGTTACTTCCGCAAGGAAATCTTTGTCGTTACAACAAGAGCATAAGAATAAGCATTATAAGACTAGAGGGAAAGTTGCCAACGAGGAGGAAGTTACCAGCTTCAAAACTACGAGTTTGGGGCAGCAACCACAGAGAATGAAGCAGAGTTCACTGGCTGCAAAGCGTAAGAGATTACTTTGGACAGCAGAAGAAGAAAAAGTTCTCAAGGAAGGAGTATCAAAGTTCTCCACAGAAAATCAGAATATCCCTTGGAGGAAAATTTTGGAATTTGGCTGTCGTGTATTTGATGAGACTCGTACTCCTGTTGATCTCAAGGATAAATGGAAGAACATTATCTCCAAGAAAAGTAGAAGTACTGATTGTAGTTATACTTTTGATTTATAA 1356 0.4565 MRRKSRGKRRRAASATTLSPSSLSAIPILWDAYDTICIHCNNKGEEAKEDGLLICSGRGCPVAVHATCLATGPKFDGSGNFCCPYCWYKRAVDTCRRLREKALEAKGDLSRFLDNHDHARAAAHVDLVVQDSEELMEETGTQAQSKDNKDEEGEARVNQVHDREETETEPEGNKEKEGKVRDNEELVEERERKTVTEAQSQENKAEEDKFQDDSEELVVETETETEVQCEENKEEGKVRDSEEHVEEMETETGAEAQPEEKKDEGKVRDSEKLVEETQTETEGQSEEKKDEEGKVAVMSSSVSETYDSDSVAVSMKKRKDKKKKVTSARKSLSLQQEHKNKHYKTRGKVANEEEVTSFKTTSLGQQPQRMKQSSLAAKRKRLLWTAEEEKVLKEGVSKFSTENQNIPWRKILEFGCRVFDETRTPVDLKDKWKNIISKKSRSTDCSYTFDL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2289 451 MobiDBLite consensus disorder prediction 334 353 - -
Gso11g2289 451 MobiDBLite consensus disorder prediction 354 373 - -
Gso11g2289 451 CDD PHD_SF 36 86 - -
Gso11g2289 451 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 35 443 - -
Gso11g2289 451 Coils Coil 231 251 - -
Gso11g2289 451 SMART PHD_3 36 87 IPR001965 -
Gso11g2289 451 MobiDBLite consensus disorder prediction 230 295 - -
Gso11g2289 451 SMART sant 380 438 IPR001005 -
Gso11g2289 451 MobiDBLite consensus disorder prediction 212 229 - -
Gso11g2289 451 Gene3D - 384 448 - -
Gso11g2289 451 MobiDBLite consensus disorder prediction 143 211 - -
Gso11g2289 451 SUPERFAMILY FYVE/PHD zinc finger 8 90 IPR011011 -
Gso11g2289 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 126 IPR013083 -
Gso11g2289 451 CDD SANT_TRF 384 436 - -
Gso11g2289 451 ProSiteProfiles Myb-like domain profile. 376 436 IPR001005 -
Gso11g2289 451 Pfam Myb-like DNA-binding domain 384 435 IPR001005 -
Gso11g2289 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 376 440 IPR017930 -
Gso11g2289 451 Coils Coil 173 208 - -
Gso11g2289 451 MobiDBLite consensus disorder prediction 135 376 - -
Gso11g2289 451 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 35 443 - -
Gso11g2289 451 ProSitePatterns Zinc finger PHD-type signature. 37 86 IPR019786 -
Gso11g2289 451 SUPERFAMILY Homeodomain-like 379 437 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2289 Gso-Chr11 38798086 38803295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g2289 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2289 - - gmx:100787956 805.438