Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2287 ATGGCTATGACTGTGGAGGCTCAGTTCCATGTTTTGGCTGTTGATGACAGTATTATTGACAGAATGCTGATTGAGAGGCTCCTAAAAACCTCTTCCTTTCATGTTACTACACTGGACTCTGCCACTAAGGCCTTAAAATTTCTTGGTTTGGTTGAAGATGAGTTGCGGACTTTTGACACTACTGTTGCATCAGAAATTCATCAGGATGTAGATGTAAACTTGATTATAACAGATTACTGCATGCCAGGAATGACTGGCTATGATCTGCTGAGAAAAATCAAGGAATCTAAATCTCTTAAAAACATACCAGTTGTGATTATGTCCTCAGAGAATGTACCATCAAGGATCAACCGATGCTTGGAAGAGGGTGCAGAAGAATTCTTTCTGAAACCAGTTCAACAGGCAGATGTGAACAAGCTGAAACCTCACTTGATGAAATCAAGACCTAAGGAAGAGCAAGACCAGCCCTTCAATAACAAAAGGAAGGACATGGAGGAAATCCACTCCCCAAATAAAACCAGGATAAAATGTAGCAGTTAA 540 0.4037 MAMTVEAQFHVLAVDDSIIDRMLIERLLKTSSFHVTTLDSATKALKFLGLVEDELRTFDTTVASEIHQDVDVNLIITDYCMPGMTGYDLLRKIKESKSLKNIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQADVNKLKPHLMKSRPKEEQDQPFNNKRKDMEEIHSPNKTRIKCSS* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2287 179 PANTHER RESPONSE REGULATOR ARR8, PUTATIVE-RELATED 2 176 - -
Gso11g2287 179 SMART REC_2 9 144 IPR001789 GO:0000160
Gso11g2287 179 MobiDBLite consensus disorder prediction 142 179 - -
Gso11g2287 179 ProSiteProfiles Response regulatory domain profile. 10 145 IPR001789 GO:0000160
Gso11g2287 179 CDD REC_typeA_ARR 11 140 - -
Gso11g2287 179 Gene3D - 10 175 - -
Gso11g2287 179 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 176 IPR045279 GO:0009736
Gso11g2287 179 SUPERFAMILY CheY-like 9 141 IPR011006 -
Gso11g2287 179 MobiDBLite consensus disorder prediction 142 172 - -
Gso11g2287 179 Pfam Response regulator receiver domain 11 137 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2287 Gso-Chr11 38786238 38788422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2287 1 156 Response Regulator Gene Family AT2G41310 64.744 4.48e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso11g2287 Response_reg 8.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2287 K14492 - gmx:100787436 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g2287 11 38786238 38788422 Gso15g2264 15 51586521 51591464 PCT