Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso11g2285 | ATGGCTGAAACCCTAATTTTCTCCGTCCCCACCGGAGAACCTTCTTTCTTAATATTCCTAAATCGCACCTTTCTCTCCATCAAACGACGCCTCCTCGCTCGCATTCTTCGCTACCAAAACGACGCCGTTGCACACTCCAGGATTTTCCGTGAAGTGGATGATTCGGCCACTGAGAAAAAGTGCGAATTAAACGCCGGAGATTGTTTGTCAAACGACGGCGGGAATGGACGACACGCCGTTTTCAATGCGCTGGATACTATGCTTAAGGACAGTTTAGAGCGTCTTAAGATGATGAGGGAAAACTTATGTCTGGTAAAGACTGGTCTAACTATAGGATATGCATGTGAATCCAAGTATGCTGAAGATACAGCTACTATTAGGCGTTTGTGCTTAGATGGTAAGCTGGGAGCAGCTGTTTGGCTTTGGGGGAAAATGGCGCAGAAAGGTGTCGTTTCTGATGTGTTTACCCACAACCATATTGTAAATGGGCTGTGCAAAATTGGGCTTCTGGACAAGGCGGATTTGGTTGTTAGAGAGATGTTAGAATTTGGTCCTCGTCCCAACTGTGCCACTTATAATACTTTGATTAAGGGCTATTGTGCTGTTAATGGTGTGGATAGGGCTTTGTATCTGTTCTCCACCATGACCTATGCTGGGATTCTGCCAAACAGGGTTACTTGTAGGATACTGGTGCATGCACTGTGTGAGAAAGGTCTTCTTATGGAAGCTAAAAGGATGCTTGAAGAAGTATTAAAGGATGATGACGAGAAAGACATACCTGATTTAGTTATCTCTACTGTATTTATGGATAGCTACTTTAAGGATGGAGCAATTATTCAGGCTCTCAATCTTTGGAATCAGATGCTTCAAAATTGTACTAAAGTTGATGTTGTAGCTTATAATGTTCTTATCAATGGATTTTGCAAGAGTCAACAAATGAACCTTGCATATGGATATGCATGTGAGATGTTTAAGAAAGGTTTACTTCCTGATGCTTTTACTTATAATATTATTATTGGTGCTCTTTGCAAGGAAGGAAAAATTAGTGAGGCTTGCTATACCGTTGGAGTTATGTCTAATATGGGAATTATGCCTGATCAAATTACATACCAGATTGTGATTCGAGGCCTTTGTTTTGCTGGAGAGGTTGTTAGAGCAAAACACTTGCTTTGGTGTATGTTGAACAATTTAATGGTGCCCAAGCCTTTAATATGGAATCTAATAATTGACTTATATGGGAGATATAATGATCTTAGTAATGCATTTTTTACAAGAGATCAGATGCTGTCTTTCGGTGTTTGCCCTAATGTATTTACTTATAATGCTTTAATTCTTGCACAAGTGAAGAGTGGAAATTTCCATGGTGCTTGCTCTCTGAAGGAAGAGATGATTTCGAAATGTCTCTTTCCTGATGTGGTTACCTATAATTTGTTGATAGGTGCTGCTTGTAATATAGGACGTCTTGATTTTGCTCTTCTATTACATGATCAGATGGTGCAGAGGGGTTATGAACCAGATTTAATAACTTATACTGAACTTGTTAGGGGGTTCTGTATAAGAGGTAAGATGAAAGAGGCAGAAGAGCTCTATGCCAAAATACTAAAATCTGGTTTGTTGAATGATCATGTTCCAGTTCAGATTCTTTTTAATAAGTACTGCAAATTGAAGGAACCAGTTATAGCATTTAACTTTTATCAAGACTGGTTGGAAAGTAAAAAGGGCAGTCTTCCTTGA | 1734 | 0.395 | MAETLIFSVPTGEPSFLIFLNRTFLSIKRRLLARILRYQNDAVAHSRIFREVDDSATEKKCELNAGDCLSNDGGNGRHAVFNALDTMLKDSLERLKMMRENLCLVKTGLTIGYACESKYAEDTATIRRLCLDGKLGAAVWLWGKMAQKGVVSDVFTHNHIVNGLCKIGLLDKADLVVREMLEFGPRPNCATYNTLIKGYCAVNGVDRALYLFSTMTYAGILPNRVTCRILVHALCEKGLLMEAKRMLEEVLKDDDEKDIPDLVISTVFMDSYFKDGAIIQALNLWNQMLQNCTKVDVVAYNVLINGFCKSQQMNLAYGYACEMFKKGLLPDAFTYNIIIGALCKEGKISEACYTVGVMSNMGIMPDQITYQIVIRGLCFAGEVVRAKHLLWCMLNNLMVPKPLIWNLIIDLYGRYNDLSNAFFTRDQMLSFGVCPNVFTYNALILAQVKSGNFHGACSLKEEMISKCLFPDVVTYNLLIGAACNIGRLDFALLLHDQMVQRGYEPDLITYTELVRGFCIRGKMKEAEELYAKILKSGLLNDHVPVQILFNKYCKLKEPVIAFNFYQDWLESKKGSLP* | 578 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso11g2285 | 577 | Gene3D | Tetratricopeptide repeat domain | 183 | 252 | IPR011990 | GO:0005515 | |
| Gso11g2285 | 577 | Gene3D | Tetratricopeptide repeat domain | 253 | 320 | IPR011990 | GO:0005515 | |
| Gso11g2285 | 577 | Gene3D | Tetratricopeptide repeat domain | 67 | 182 | IPR011990 | GO:0005515 | |
| Gso11g2285 | 577 | Gene3D | Tetratricopeptide repeat domain | 321 | 397 | IPR011990 | GO:0005515 | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 471 | 505 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 506 | 540 | IPR002885 | - | |
| Gso11g2285 | 577 | Gene3D | Tetratricopeptide repeat domain | 406 | 575 | IPR011990 | GO:0005515 | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 153 | 187 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 296 | 330 | IPR002885 | - | |
| Gso11g2285 | 577 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL | 15 | 572 | - | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 473 | 506 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 333 | 366 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 404 | 437 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 298 | 332 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 438 | 472 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 508 | 538 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 155 | 189 | IPR002885 | - | |
| Gso11g2285 | 577 | TIGRFAM | PPR: pentatricopeptide repeat domain | 191 | 223 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 188 | 222 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat | 404 | 433 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat | 266 | 291 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat | 438 | 466 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 436 | 470 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat | 148 | 180 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat | 361 | 390 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 331 | 365 | IPR002885 | - | |
| Gso11g2285 | 577 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 401 | 435 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat family | 296 | 344 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat family | 187 | 235 | IPR002885 | - | |
| Gso11g2285 | 577 | Pfam | PPR repeat family | 470 | 518 | IPR002885 | - | |
| Gso11g2285 | 577 | PANTHER | PPR CONTAINING PLANT-LIKE PROTEIN | 15 | 572 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gso11g2285 | 322 | 571 | Glycosyltransferase | AT1G05670 | 27.490 | 4.23e-22 | 99.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso11g2285 | - | - | gmx:100786895 | 1166.76 |