Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2283 ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACTCCTTCTCAACTTCACCACCATCAACAACACCAACCCATTTCAGCAGAACACCATTCAAACCTCCCTTTGCCTTCACAAGCCTCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACAGTGCCACACACCAATGATGTTCAAGTTCAGGTTCAAGACTGTGCCAACAACAACACCAACACCAACACCAACTATTGGAACCTGAAGATGTGTGGTGCCACTGAAGTGAATTCCACAAGAAAAGGTGTTATGAACATGGAGGATGAGGGAAGCAATAAGCAAATGATGGAGAGTGAGGAAGGTGGGGGTGAGTTTAGGGTGTGCCAGGATTGTGGCAATAGAGCCAAGAGAGATTGCAGCTTCAGAAGGTGCAGGACTTGCTGCAAGGGACGTGGCTTTGATTGCAGCACTCACGTGAAGAGCACGTGGGTCCCCGCGTCTATGAGACGGGGTGGTGGTGGTGATAGTAGTGGTGGTGATGGCAACAGCGATGCTGGTGCTTCTAAGAGGCTAAGAACTTTGGGGTCATCAAAGAATGTTGCTGCTAGTGCTACCTCTCATAGTTCCACTTCCAATGCTACCCCAACAAAGAGCTTTGATACCAGTTCTTGTCAACAAGATGCTGGTTTCAAACAGTCTTTGCCACGGCACGTGCGTGCACCTGCGGTTTTTAGGTGCCATAGAGTGTCTGCTATTGGGAGTGGTGAAGATGAGATTGTTTACATGGCCACAGTTCATATTAGTGGCCATGTTTTTAAGGGGTTTCTGTATGATCATGGTGCTGATGCCAGAAATGATGTGCCTAGTGTCTCAGAACTGCAATTGGGAAACAATGGAAGTGGAAAGAATAATAATAGGGAATGCTCTTCGGCAATTGGGGTTCCAACTAGTGCTTACCCTGCTTCTGTTTGCTGA 960 0.4729 MNMLGLRDLVFIAPTPSQLHHHQQHQPISAEHHSNLPLPSQASLSVGLGIFPLLTVPHTNDVQVQVQDCANNNTNTNTNYWNLKMCGATEVNSTRKGVMNMEDEGSNKQMMESEEGGGEFRVCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSSGGDGNSDAGASKRLRTLGSSKNVAASATSHSSTSNATPTKSFDTSSCQQDAGFKQSLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADARNDVPSVSELQLGNNGSGKNNNRECSSAIGVPTSAYPASVC* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2283 319 Pfam Domain of unknown function (DUF702) 122 277 - -
Gso11g2283 319 MobiDBLite consensus disorder prediction 17 36 - -
Gso11g2283 319 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 122 164 IPR006510 -
Gso11g2283 319 PANTHER LRP1 CARBOXY-TERMINAL DOMAIN PROTEIN 2 319 - -
Gso11g2283 319 MobiDBLite consensus disorder prediction 160 217 - -
Gso11g2283 319 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 319 IPR007818 GO:0003700|GO:0006355
Gso11g2283 319 MobiDBLite consensus disorder prediction 184 217 - -
Gso11g2283 319 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 229 275 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2283 Gso-Chr11 38725667 38731070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2283 1 306 C2H2 Transcription Factor Family AT5G12330 40.867 7.95e-62 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gso11g2283 DUF702 3.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2283 - - gmx:100777812 614.379