Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2268 ATGAAAACCAGAGAGCCGTTCTGTTCCGTTTGCCAAACCCGCTACGACGAGGAGCTGCGGGTCCCACTTCTTCTCCAATGCGGCCACGGCTTCTGCCGGGACTGTCTTTCCAGAATGTTCTCCGCCTCAACCGACACCACGCTGACGTGTCCCCGCTGCCGCCACGTGTCCTCCGTCGGAAACTCCGTCCACGCGCTTCCGAAAAACTTCCCCGTCCTCGCGCTCCTCCGCTCGCCGTCTTCTTCTAACGCCGTCAGGTCCGTTCTCGACTTCGATTTCGATTACACCGATGATGAAGACGAAGATCAAGATCAAGACCAAGACTATCGGAGCTACCTAAAAGACGATGAAGTACTGTGGCGGAACGGTGGTGGAGGATTGAGGCTGGTGCGGCGGATTGGAGAGGGCGGGAGGGCGGGCGTGGAGACGTGGACGGCGGTGATGGGTGGTGGAGGGCGGAAGGTGGCGGTGAAGAAGGTAGAGGCGGTGGAGGAGATGGAGTTGGTGATGGAGAAGCTTGAGCTTTTGCAAAGGGGTTCGATGTGGTGTAGGAATGTGTGCACGTTTCATGGGGCAGTGAGAGTTGGTGATGGGTTGTGGCTTGTCATGGATAGGTGTAACGGGTCCATTCAGTCGGAGATGCAACGCAATGAAGGCAGACTCACTTTGGAGCAAGTCCTAAGATATGGGGCTGACATTGCGCGAGGGATTGCTGAGTTACATGCTGCAGGTGTTGTTTGCATGAATATAAAACCATCCAATCTTCTTCTTGATTCAAATGGCCATGCAGTGGTTTCTGATTATGGGCTTGCTGCTATTCTGAAGAAGCATTCCTGTTGGAAGGGCCAACCAGAGTGTGAGTCCTCAAACACCCACTCATGTATGGAATGTACAGTGCTCAGTCCACATTATGCAGCTCCAGAGGCTTGGGGGCAACCTGTGAAGAAGTCATTAAATTTGTTCTGGGATGATGCAATAGGTATATCAGCAGAGTCTGATGCCTGGAGTTTTGGTTGTACACTGGTGGAGATGTGCACAGGTTTTGTTCCCTGGGCTGGTTTAAGTTCGGAGGAAATTTATCAAGCAGTTGTCAAGGCCAAGAAACTGCCTCCACAGTATGCCAGTGTTGTTGGTGGTGGAATACCTAGTGATTTGTGGAGGATGATTGGAGAGTGCTTGCAGTTCAAGCCATCTAAAAGGCCTAGTTTTACTGCAATGTTAGCAATATTTCTCCGTCATTTGCAGGGAATACCGCACAGCCTTCCTGCAAGCCCTGATAATGACTTTGTTAAAAGCTTTTCATCAAATGTGATGGAGTTGCCCCCTCTGTCTGAATTTGAAGTTTCTCATCAAAACCCATTCCATCTTCATCAACGTGTATCTCAGGGGGATGTCAGAAGTGTTAGAGAACTTCTTTTCAAGGCTGTATCAGATTATGGCAACAACTACCTATCTTCTCTATTGGAAGCTCAAAATGCTGACGGACAAAATGCTCTCCACTTGGCTTGTAGACGTGGCAGTGCAGAACTTGTTGAGGCAATTTTGGAGAATGAAGAGGCAAATGTTGACGTCTTGGACAAAGATGGAGATCCTCCTCTTGTTTATGCATTAGCTGCTGGATCCCCAGAATGCGTTCGTAGTCTTATCAAAAGAGGTGCTAATGTGAGATCACAATTAAGAGATGGCTTTGGCCCATCTGTTGCTCATGTTTGTGCACATCATGGCCAACCAGAATGCATGCGAGAATTACTATTAGCTGGAGCTGATCCTAATGCAGTGGATGATGAAGGTGAATCTGTCCTGCATAGAGCAGTTGCCAAGAAGTCCACTGACTGTGCCCTTGTGATAGTGGAAAATGGGGGCAGTAGATCAATGGCCATCTTGAATTCAAAGAATATGACACCGCTGCACTTGTGTGTGGCAACTTGGAATGTTGCCGTTGTAAAAAGATGGGTTGAAATTGCAACTTCTGATGAGATTGCTGAATCAGTTGACATCCCAAGCCCTATGGGCACTGCTTTGTGCATGGCTGCTGCCTCTAAGAAAGATCATGAAAGTGAGGGGAGAGAATTGGTGCAGATATTGCTTGCTGCTGGAGCAGATCCATATGCTCAAGATTCACAGCATGGGTGGACAGCTTTGCATACAGCTGTTATGACTGACAATGTTGAATTAGTTAAGGTTATTCTTGCTGCTGGTGTTGATGTGAACATTCGCAATATGCACAATGGCATTCCTCTTCACATAGCCTTAGCTAGGGGAGCTAAGTCATGTGTTGAACTACTTCTATCTATTGGGGCAGATTGTAATTTGCAGGATGATGATGGTAATACTTCTTTCCATATAGCAGCAGAAACAGCAAAAATGATACGTGAAAATCTTGATTGGCTCATTCTTATGCTTGGGAATCCTAATGCTGATGTATTAGTCAGAAACCACAGTGGCAAGACTCTTCTTGATGTCTTGGAGGTCCTTCCCCGAGAATGGATATCTGAAGATCTGATGGAGGCACTCATGAAGAAAGGAGTTTGTCTCTCTCCTACAATATTTGAAGTGGGAGACTGGGTGAAGTTTAGAAAAACTTCCATAACTCCAACAAATTGGTGGGAAGGTGATCGGCAGAAGCAGGTGGGCTTTGTGCAAAGAGTTCCAGACAAAGATAATCTCATTGTTTCATTTTGTTCTGGAGATTATAATGTTTTAGCCAATGAAGTTGTAAAAGTCATTCCATTAGACAGGGGACAACATGTGCAGCTTAAAGAGGATGTAAAAAAGCCAAGGTTTGGTTGGCCTGGGCAGTCTCGTGACAGCATTGGGACAGTATTATGTGTTGATGATGATGGGATCATCCGAGTTGGATTTCCTGGACAATCCAGAGGATGGAAAGCTGATCCAGGAGAGATGGAACGGGTTGAAGAATTCAAGGTTGGAGATTGGGTTCGCATTCGTCCTTTTCTTACGTCTACAAAGTATGGATTAGGATCTGTGACACCAGGAAGCATCGGCATTGTATATTGTATCAGACCAGACAGTAGTCTGTTAATAGAACTGAGTTATCTTCCAACTCCATGGCATTGTGAACCGGAGGAGGTTGAGCAGGTTGTCCCTTTTAGGATTGGTGATCGGATATGCGTGAAGCGATCTGTTGCAGAACCTAGATATGCTTGGGGAGGTGAGACACATCATAGCGTTGGAAAAATAAGAGAGATTGAGGGTGATGGTCTCTTAATAATAGATATACCAAACCGACCTGTTCCATGGCAAGCAGATCCATCAGACATGGAGAAGGTGGAAGATTTTAAGGTTGGAGATTGGGTCAGAGTTAAAGCTTCAGTGTCTGCTCCAAGATATGGATGGGAGGATGTTACAAGAAACAGCATTGGAGTAATTCATAGCTTGGAGGAGGATGGCGATATGGGTATTGCCTTTTGCTTCAGGAGTAAGCTTTTTCCTTGCTCAGTCACTGATGTTGAGAAAGTTCCCCATTTTGAGGCGGGGCAAGAAATACGCGTGATGCCATCTGTTAACCAGCCACGGCTTGGATGGTCAAATGAATCACCCTCTACTTTTGGAAAAATAGCAAGAATTGATCTGGATGGTGCTCTCAATGTGAGGGTCCCTGGTAGGAAGAGCTTGTGGAAGGTTTCTCCTGGAGATGTGGAACAACTTCCAGGATTTGAAGTTGGTGATTGGGTTTGCTCAAAACCAAGCCCGGGAAGCAGATCAAGCAATGACTTGAATGGTGTTAGAAGTATAGCTGTTGTGCATAGTGTACAGGATTCTGGGTACTTGGAGTTGGCTTGCTGTTTCCGTAAATTGAAGTTGTTGACTCATTATACTGAAGTTGAAAAGGTTCCTTGCTTTAAAGTTGGGCAGTATGTTAGGTTCAGAACTGGTTTGGTGGAACCAAGGTGGGGTTGGAGAGGAGCTCAGCCTGAATCTCGAGGCTTTTTAACCGGCATTCATGCTGATGGAGAAGTGAAGGTGGCATTCTTTGGTTTGCCAGGATTGTGGAGAGGAGACCCTGCAGACCTGGAAATTGAACAGATGTTTGAAGTGGGAGAGTGGGTGAGGTTGAAAGATGATGGCAATGATTGGAACTCAATTCGGCCAAGTAGTGTTGGTGTGGTACAAGGCTTAGGGTATGAAGGAGATGAATGGAACTATAGTACTTATGTTGCCTTTTGTGGAGAACAAGAAAAGTGGGTAGGACCTAGTTCCCATCTTGAAAGAGTTCACAAACTCTTTCTTGAACAGAAAGTTAGAGTAAAACTTAACGTAAAGCAACCAAGATTTGGGTGGTCCGGGCACACCCATGAGAGCATTGGAACGATACAAGCCATCGATGCTGATGGAAAGCTTCGAGTATACACGCCTGAGGGATCAAGAGCATGGATGTTGGACCCATCAGAAGTGGAGGTGGTGGAAGAGAAGAGGCTCTGCATTGGAGACTGGGTCAAGGTTAAAGCATCGGTTTCAACCCCAACACACCATTGGGGAGAGGTGACTCATTCAAGCATAGGAGTGGTGCATCGGATAGAAGATGAGAATCTCTGGGTGGCTTTCTGTTTTATGGAGAAGCTATGGCTATGTAAAGCATGGGAAATGGAACAGGTTAGGCCATTTAGAGTGGGAGACAATGTTAGGATCAAAGATGGATTGGTGACCCCACGGTGGGGATGGGGAATGGAGACACATGCCAGTAAGGGAAGGGTGGTAGGAGTAGATGCAAATGGCAAAGTAAGAATAAAGTTTCAGTGGAGGGAAGGAAGGCCTTGGGTAGGAGACCCTGCTAATGTTGTCCTTGATGAAAATTGA 4818 0.4643 MKTREPFCSVCQTRYDEELRVPLLLQCGHGFCRDCLSRMFSASTDTTLTCPRCRHVSSVGNSVHALPKNFPVLALLRSPSSSNAVRSVLDFDFDYTDDEDEDQDQDQDYRSYLKDDEVLWRNGGGGLRLVRRIGEGGRAGVETWTAVMGGGGRKVAVKKVEAVEEMELVMEKLELLQRGSMWCRNVCTFHGAVRVGDGLWLVMDRCNGSIQSEMQRNEGRLTLEQVLRYGADIARGIAELHAAGVVCMNIKPSNLLLDSNGHAVVSDYGLAAILKKHSCWKGQPECESSNTHSCMECTVLSPHYAAPEAWGQPVKKSLNLFWDDAIGISAESDAWSFGCTLVEMCTGFVPWAGLSSEEIYQAVVKAKKLPPQYASVVGGGIPSDLWRMIGECLQFKPSKRPSFTAMLAIFLRHLQGIPHSLPASPDNDFVKSFSSNVMELPPLSEFEVSHQNPFHLHQRVSQGDVRSVRELLFKAVSDYGNNYLSSLLEAQNADGQNALHLACRRGSAELVEAILENEEANVDVLDKDGDPPLVYALAAGSPECVRSLIKRGANVRSQLRDGFGPSVAHVCAHHGQPECMRELLLAGADPNAVDDEGESVLHRAVAKKSTDCALVIVENGGSRSMAILNSKNMTPLHLCVATWNVAVVKRWVEIATSDEIAESVDIPSPMGTALCMAAASKKDHESEGRELVQILLAAGADPYAQDSQHGWTALHTAVMTDNVELVKVILAAGVDVNIRNMHNGIPLHIALARGAKSCVELLLSIGADCNLQDDDGNTSFHIAAETAKMIRENLDWLILMLGNPNADVLVRNHSGKTLLDVLEVLPREWISEDLMEALMKKGVCLSPTIFEVGDWVKFRKTSITPTNWWEGDRQKQVGFVQRVPDKDNLIVSFCSGDYNVLANEVVKVIPLDRGQHVQLKEDVKKPRFGWPGQSRDSIGTVLCVDDDGIIRVGFPGQSRGWKADPGEMERVEEFKVGDWVRIRPFLTSTKYGLGSVTPGSIGIVYCIRPDSSLLIELSYLPTPWHCEPEEVEQVVPFRIGDRICVKRSVAEPRYAWGGETHHSVGKIREIEGDGLLIIDIPNRPVPWQADPSDMEKVEDFKVGDWVRVKASVSAPRYGWEDVTRNSIGVIHSLEEDGDMGIAFCFRSKLFPCSVTDVEKVPHFEAGQEIRVMPSVNQPRLGWSNESPSTFGKIARIDLDGALNVRVPGRKSLWKVSPGDVEQLPGFEVGDWVCSKPSPGSRSSNDLNGVRSIAVVHSVQDSGYLELACCFRKLKLLTHYTEVEKVPCFKVGQYVRFRTGLVEPRWGWRGAQPESRGFLTGIHADGEVKVAFFGLPGLWRGDPADLEIEQMFEVGEWVRLKDDGNDWNSIRPSSVGVVQGLGYEGDEWNYSTYVAFCGEQEKWVGPSSHLERVHKLFLEQKVRVKLNVKQPRFGWSGHTHESIGTIQAIDADGKLRVYTPEGSRAWMLDPSEVEVVEEKRLCIGDWVKVKASVSTPTHHWGEVTHSSIGVVHRIEDENLWVAFCFMEKLWLCKAWEMEQVRPFRVGDNVRIKDGLVTPRWGWGMETHASKGRVVGVDANGKVRIKFQWREGRPWVGDPANVVLDEN* 1606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2268 1605 Gene3D - 749 830 IPR036770 -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat profile. 528 560 IPR002110 GO:0005515
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat region circular profile. 709 740 - -
Gso11g2268 1605 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat region circular profile. 494 517 - -
Gso11g2268 1605 CDD RING-HC_ScPSH1_like 8 54 - -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat profile. 742 774 IPR002110 GO:0005515
Gso11g2268 1605 SMART ring_2 8 53 IPR001841 -
Gso11g2268 1605 Coils Coil 508 528 - -
Gso11g2268 1605 Pfam Ankyrin repeats (3 copies) 456 556 IPR002110 GO:0005515
Gso11g2268 1605 Pfam Ankyrin repeats (3 copies) 688 773 IPR002110 GO:0005515
Gso11g2268 1605 SUPERFAMILY RING/U-box 4 63 - -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat region circular profile. 528 555 - -
Gso11g2268 1605 Pfam Ankyrin repeats (many copies) 566 613 IPR002110 GO:0005515
Gso11g2268 1605 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Gso11g2268 1605 Gene3D - 644 748 IPR036770 -
Gso11g2268 1605 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 1604 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Gso11g2268 1605 Gene3D - 446 643 IPR036770 -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat region circular profile. 742 774 - -
Gso11g2268 1605 Gene3D Transferase(Phosphotransferase) domain 1 102 412 - -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 1481 1600 IPR040847 -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 1226 1345 IPR040847 -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 1100 1220 IPR040847 -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 1351 1472 IPR040847 -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 974 1094 IPR040847 -
Gso11g2268 1605 Pfam Mind bomb SH3 repeat domain 850 968 IPR040847 -
Gso11g2268 1605 SUPERFAMILY Protein kinase-like (PK-like) 117 438 IPR011009 -
Gso11g2268 1605 Pfam Protein kinase domain 130 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat profile. 563 595 IPR002110 GO:0005515
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat profile. 709 741 IPR002110 GO:0005515
Gso11g2268 1605 PRINTS Ankyrin repeat signature 495 510 IPR002110 GO:0005515
Gso11g2268 1605 PRINTS Ankyrin repeat signature 758 772 IPR002110 GO:0005515
Gso11g2268 1605 CDD STKc_PknB_like 128 408 - -
Gso11g2268 1605 ProSiteProfiles Protein kinase domain profile. 127 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2268 1605 SUPERFAMILY Ankyrin repeat 490 788 IPR036770 -
Gso11g2268 1605 ProSiteProfiles Ankyrin repeat profile. 494 527 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 494 524 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 631 662 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 596 625 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 775 810 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 742 771 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 563 592 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 709 738 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 669 704 IPR002110 GO:0005515
Gso11g2268 1605 SMART ANK_2a 528 557 IPR002110 GO:0005515
Gso11g2268 1605 Pfam RING-type zinc-finger 8 51 IPR027370 -
Gso11g2268 1605 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG-LIKE 4 1604 - -
Gso11g2268 1605 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 86 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2268 Gso-Chr11 38481248 38496753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2268 152 421 MAP Kinase Kinase Kinase AT4G18950 26.259 1.35e-18 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gso11g2268 Pkinase 6.8e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2268 K16279 - gmx:100783181 3214.48