Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2259 ATGTTCTCAATCATGGAGGGTGATAGCGTTACATTCATTTCCAATCCTGAGACCTATGAATTGGAGAGTGATAGTTTTACAAAAATTTCCTCTCCTGATAACGGTGATAAGTCTAAGACGATTGTGGGTGCGGTTTGGGTAGAGGGAGATAACAAGTATAACAGCAACGATTCAAGAAAATTTGGTCCTGTTCCTTTTGACCTTATTGATGGCAAGATGTTCTGGAATAATGCCACTTAA 240 0.3917 MFSIMEGDSVTFISNPETYELESDSFTKISSPDNGDKSKTIVGAVWVEGDNKYNSNDSRKFGPVPFDLIDGKMFWNNAT* 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2259 79 CDD S26_SPase_I 33 72 IPR019533 GO:0004252|GO:0006465
Gso11g2259 79 SUPERFAMILY LexA/Signal peptidase 43 75 IPR036286 -
Gso11g2259 79 ProSitePatterns Signal peptidases I signature 3. 45 58 IPR019758 GO:0004252|GO:0016021
Gso11g2259 79 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 5 76 - -
Gso11g2259 79 Pfam Signal peptidase, peptidase S26 40 74 IPR019533 GO:0004252|GO:0006465
Gso11g2259 79 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 76 - -
Gso11g2259 79 Gene3D Umud Fragment, subunit A 5 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2259 Gso-Chr11 38375435 38377193 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2259 21 76 MADS-box Gene Family AT1G29960 42.373 2.07e-10 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2259 K09647 - gmx:102659912 167.162