Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2250 ATGATATTGAGAAACCTGGAGGCATTTGTGCCTATTATTAAAGCAGGATGGAGGTTTTCTAAGATCTACTGTTTTATACACGTTACCCAAACCTATTTGATCGCCCCTGCTGTGACCTATGGTCCTAGCATGCTTCCTACTATCGATTTGAAAACAGGTGTGTTCTTAATGGAAAAGATCTCACCCCGGTTTGGTAAAGTTACTTGTGGAGATATTGTAGTCTTGCGCAATCCTCAACACCCTAGGCACTTTATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGTGTTACATACATTTCCAATCCTGAGACCTATGAATATGAGGGTGATAGTTTTACACACATTTCCTCTCCTGATAACGGTGATAAGTCTAAGACGATTGTGGTGCCAAAGGGTGCCGTTTGGGTTGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGATGGCAAGATGTTCTGGAGGATAACGCCACTTAAAAAATTTGGACCTTTCTGGAATAAATGA 540 0.4093 MILRNLEAFVPIIKAGWRFSKIYCFIHVTQTYLIAPAVTYGPSMLPTIDLKTGVFLMEKISPRFGKVTCGDIVVLRNPQHPRHFMTKRVVGLEGDSVTYISNPETYEYEGDSFTHISSPDNGDKSKTIVVPKGAVWVEGDNKYNSNDSRKFGPVPYDLIDGKMFWRITPLKKFGPFWNK* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2250 179 Gene3D Umud Fragment, subunit A 29 178 - -
Gso11g2250 179 SUPERFAMILY LexA/Signal peptidase 31 177 IPR036286 -
Gso11g2250 179 TIGRFAM sigpep_I_bact: signal peptidase I 24 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2250 179 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 1 178 - -
Gso11g2250 179 ProSitePatterns Signal peptidases I signature 3. 135 148 IPR019758 GO:0004252|GO:0016021
Gso11g2250 179 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 178 - -
Gso11g2250 179 Pfam Signal peptidase, peptidase S26 21 166 IPR019533 GO:0004252|GO:0006465
Gso11g2250 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 32 48 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2250 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2250 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 149 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2250 179 CDD S26_SPase_I 36 162 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2250 Gso-Chr11 38285792 38288835 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2250 44 176 MADS-box Gene Family AT1G29960 42.857 7.81e-33 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2250 K09647 - gmx:100805997 376.326