Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2249 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTCTTGCGTCGCAAATGCCAACCTGAGTGTGCATTTGCACCATATTTTCCCCCTGACCAGCCTCAAAAGTTTGCAAATGTTCATAGAATTTTTGGGGCAAGCAATGTCACAAAGCTTCTCAACGACTTGCACCCTCACCAACGTGAAGATGCTGTCAATTCCCTTGCTTATGAAGCTGAGATGAGGCTCCGTGACCCTGTCTATGGTTGTGTAGGAGTCATATCACTCTTACAACACCAACTTCGCCAGCTTCAAATGGACCTCTATTGTGCGAAATCCGAGCTCTCGAGGTACCAAAACTTGAGCATCACCACCAATTTGAACTCTCTAGCTTCCGAATCCGCGACCACGGCCTATCATCACCATCACCAGAACATGTCTGGTGCTGGTGCCGGTGCCGGTGCCGGCCGTGACCATCATTATCACTATCATCGCCATCATCAGTTCTTTCCAAGGGACCAACACCAACAACAACAAGTGGTGAGAAGCTTTGATGCCGGCAACAGCTATGATGCAAGTCTTTTGGCCATGAACATATCCGCCAACTTAGGGCAACTCAACCAGCTTCAGCATCATAGTGCAGCTGGCGGGGGCGACGACCGCAACTGCTCCTAG 651 0.4962 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQNLSITTNLNSLASESATTAYHHHHQNMSGAGAGAGAGRDHHYHYHRHHQFFPRDQHQQQQVVRSFDAGNSYDASLLAMNISANLGQLNQLQHHSAAGGGDDRNCS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2249 216 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Gso11g2249 216 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Gso11g2249 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 182 - -
Gso11g2249 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2249 Gso-Chr11 38273583 38274504 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2249 2 213 AS2 family AT1G65620 62.617 1.03e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gso11g2249 LOB 3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2249 - - gmx:100819502 388.267