Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2240 ATGAGTCCTCCTCCAGCTGAATCCAACGCCATGGAAGACAGCAAGCCCGAGAATGGCGGCGACCAAGTCGAGTCTCGCTTCTTTGAGTTCTGCAAGAATGGGCTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAACGAATCTGTTTGGAGAAACCAAGCATATTCTACTGTCAAATTTTTCGTCAATGGGAAACGGAACGTCTGAAGAAGCAGAGAGGTATTGGTTTGCTTTTATTTTGTACTCTGTCAAAAAATTGATCCAGAAAAATGATGAGGGTGAGAAGGAAGACACTGAGAACACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAACAAAGCTTAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTAAGTAATCTATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATGCTATTCACTTGAAGATTCTGAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGGCAACTGACACAAATGCTGAAATAAACTCACCTATTACTGTTCATGCATCTGAATATCATCGATTTGGATGGTTGCTTTTCCTGGCACTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTAGTGACTTGCACTAATGGTTTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTGCATCACTTTGCAACATATACAACACTTCTGAAGATGAGTTGAGGAAAACCATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGCAGCCTTGCTTGGCATCTGAATGTGAAACCGAAAACCTAGAGAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCGTCTCTACCTTCTAGTCTAAGTATGTTAGAAAAAGATTATGATTACATGATTCGCAACAAGAGTGAATTGGATGAAAGGTTATTCATTAATGAGGATGACAGTCTATTAGCTTCAGTAAGCTTATCTGGAGGTTCTGTTTCAGCTGGTGGTGTAAAGAGGAAATTTGATTCAATGGCATCACCTGCTAAGACCATTACAAGTCCACTCTCACCACACCGCTCCCCCGCATCACATGCTAATGGCATCCCAGGTAGTGCAAACTCAAAGATGGCGGCCACCCCTGTAAGCACAGCAATGACTACTGCGAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCCTCGCCAGAGCTGGAACGATTTTTGACATCATGTGATAGAGATGCTACAAGTGATGTGGTTCGCAGAGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTCTCGGAGAACGATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTTATGGACAATATATGGGCCGAACAACGAAGACTGGAAGCACTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAGTACTTCATGCAACTAATTTAACCTCTCTACTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAGTTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTACTAGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGGCATGAAGAATCTCTCCCAAGAGAATTGAGAAGACATCTGAATTCATTGGAAGAACGTCTTTTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAACTCTTTGGCAGTTGCCAGACCTTCCCTTTCTGCAGAGATAAATCGTCTTGGACTGTTAGCTGAACCAATGCCATCATTGGATGAAATTGCAATGCATATTAACTTCTCTTGTGGAGGACTGCCGCCAGTGCCTACCTTGCCCAAACTTGAAAGCTCTTCAAATCAGAATGGGGATATCAGATCACCAAAGCGAAATGTTTTAATGGAAAGAAATTCTTTCACTTCACCAGTGAAAGATCGCCTTCTTCCCTTTAACAGCCTTAAGTCAAAACTACCCCCACCTCCTTTGCAGTCAGCATTTGCCAGCCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAGTTATCTCAGCAGATAAGGGAGAATGTATATTCTCTTTTCCAGCGGATCCTTAATCAGTGGACATCTCTCTTTTTCAACCGTCATATTGACCAAATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAACTCAACCTAACTTTTAAGGAGATCGTATACAACTACAGAAAGCAACCACACTGCAAACCACAAGTTTTTCGTAGTGTATTTGTTGATTGGTCATTGGCTCGCCGAAATGGGAGAACAGGACAGGAGCATATTGACATAATTACCTTTTACAATGAAATATTCATTCCTTCTGTAAAGCCACTGCTTGTTGAACTTGGCCCTGCTGGACCAACTACAAAAAGCGACCGAATACCTGAAATTAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGGTCTCCTAAAATATCACCTTTCCCAACCCTTCCTGATATGTCTCCAAAAAAAGTGTCAGCCACACATAACGTATATGTCTCTCCATTACGATCGTCCAAGATGGAGGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCATATCAGAGCCCGTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACCGGAAGGTGAGAGGTCCCCTCAACTTTGATGATGTTGATATCGGGTTGGTGAGTGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGCTGTGCTTCATCATCAGGTGCACCATTGAAATCAGAGCAACCTGACTCCTAG 3045 0.4217 MSPPPAESNAMEDSKPENGGDQVESRFFEFCKNGLALEEKSCKEATNLFGETKHILLSNFSSMGNGTSEEAERYWFAFILYSVKKLIQKNDEGEKEDTENTGLSLCRILRATKLNIADFFKELPQFVVKAGPTLSNLYGTDWENRLEAKEMHANAIHLKILSKYYKRVFGEFFVATDTNAEINSPITVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKSNKGVDLLASLCNIYNTSEDELRKTMEKANNVIADILKKQPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLSMLEKDYDYMIRNKSELDERLFINEDDSLLASVSLSGGSVSAGGVKRKFDSMASPAKTITSPLSPHRSPASHANGIPGSANSKMAATPVSTAMTTAKWLRTVISPLPSKPSPELERFLTSCDRDATSDVVRRAQIILQAIFPSSPLGERCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVLHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPSLSAEINRLGLLAEPMPSLDEIAMHINFSCGGLPPVPTLPKLESSSNQNGDIRSPKRNVLMERNSFTSPVKDRLLPFNSLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFKEIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHIDIITFYNEIFIPSVKPLLVELGPAGPTTKSDRIPEINKNDGHLAQCPGSPKISPFPTLPDMSPKKVSATHNVYVSPLRSSKMEALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDIGLVSDSMVANSLYLQNGSCASSSGAPLKSEQPDS* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2240 1014 Coils Coil 270 290 - -
Gso11g2240 1014 SUPERFAMILY Cyclin-like 422 617 IPR036915 -
Gso11g2240 1014 CDD CYCLIN 751 816 IPR013763 -
Gso11g2240 1014 Pfam Retinoblastoma-associated protein A domain 414 615 IPR002720 GO:0005634|GO:0051726
Gso11g2240 1014 MobiDBLite consensus disorder prediction 702 725 - -
Gso11g2240 1014 Gene3D - 684 884 - -
Gso11g2240 1014 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 19 1001 IPR028309 GO:0006357|GO:0051726
Gso11g2240 1014 SUPERFAMILY Cyclin-like 731 872 IPR036915 -
Gso11g2240 1014 MobiDBLite consensus disorder prediction 660 683 - -
Gso11g2240 1014 Gene3D - 193 351 - -
Gso11g2240 1014 PANTHER BNACNNG22930D PROTEIN 19 1001 - -
Gso11g2240 1014 MobiDBLite consensus disorder prediction 1 21 - -
Gso11g2240 1014 Pfam Domain of unknown function (DUF3452) 97 232 IPR024599 -
Gso11g2240 1014 SMART DUF3452_2 86 232 IPR024599 -
Gso11g2240 1014 MobiDBLite consensus disorder prediction 386 409 - -
Gso11g2240 1014 Gene3D - 417 605 - -
Gso11g2240 1014 Pfam Retinoblastoma-associated protein B domain 733 860 IPR002719 GO:0005634|GO:0051726
Gso11g2240 1014 SMART RB_A_2 414 615 IPR002720 GO:0005634|GO:0051726
Gso11g2240 1014 MobiDBLite consensus disorder prediction 659 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2240 Gso-Chr11 38164751 38172891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2240 11 1014 Core Cell Cycle Gene Families AT3G12280 69.523 0.0 1390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Gso11g2240 RB_A 5.1e-65 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2240 K04681 - gmx:100777805 1972.98