Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2235 ATGGAGGTTGCGATTACGAGAGCTAAGGGAGGAATGACGGAGGAAGTTCCTGGGATTGTAGAAGCTGCTGAACCTCCAACATCATCACAATCACCTGCTGATGTGCCACATAATTTGGAAACAGAACAAATGACTCCTACAAAGTATTCTATTATCAGTAGGAATGGGGTTGGGACCACAGGAAAACACATACCTTTACTTGTGAATCTCTTTGAAGTTGCTGTTAATGTTCCAGACACAGTATTTTTTCAGTATAGTGTTGCTATTACTTTCGAAGATAAACAAGCTGTTGAAAGCAAGGGCATTGGGAGAAAAGTGATTGATAGGCTTTACCAAACATACTCTTCTGAACTTGGTGGCAAAAGGTTTGTATATGATGGAGGGAAAACTTTGTACACAGTGGGTCCTCTGCCACTAAATAAGTACGAGTTCAAAGTGTTGCTGGAGAAATCATTTACAAAACGCAGTAGTGCCAAGAGTCCTGGTGCTAATGGAAGCCTTCATGAGGAAACTAAAAGGTCAAAACATTCATTTCAGTCAAAGACATTCATGGTGGAGATAAGTTTTGCTACCAAAATACCACTTCAGTCCATTGTTATTTCCTTGAAAGAGGTTGAGTCGGATACCAATTCTCAAGATGCTTTGAGAGTGCTTGATACTATACTGAGGCAGCGTGCAGCTAACTGTGGGTGTCTCTTGGTAAGGCAATCTTTTTTTCATGATGACTCAAGAAATTTCAATGATGTTGGGGCTGGTGTAACAGCAGTCTCAGGTTTTCATTCCAGTTTTCGTTCCACACAGCGAGGATTGTCTCTCAATATTGACGTGTCAACAACTATTATCATAAAACCTGGACCTGTAATTGATTTTCTGTTATCAAATCAGCAAGTGAAGGAACCCCGTTATATTGACTGGGAAAAGGCGAAAAAAATGCTTAAAAATTTAAGGGTGCAAGCAACTCATCATAACCAGGAATTTAAAATTTCTGGGTTGAGTGAGAAACCATGCATTCAGCAACTTTTTAGTATGAAGGTTAAAAATGATGACAACAATAGCAGAGGGCAGACAGTGGATATTACTGTTTATGAATATTTTGCCAAACACTGTGGCATAGAGTTGACCTCATCTGCTTATCTTCCATGTCTTGATGTTGGGAAACCAAAACGTCCCGTCTATCTTCCCTTGGAGCTATGTTCACTTGTTTCCCTCCAACGGTATACAAAGGTTTTATCTCTGATGCAAAGAGCATCTTTAGTTGAAAAATCACGCCAAAAGCCTCAAGATAGAATCAAAATTTTAAAAAGTGCTGTAGGAAAATGCTATGATGATGATCCTGTTCTTGCTGCATGTGGCATTTCTATTGAGAAACAACTGAATCTGATTGAAGGTCGTGTTCTTGAAACACCAAAGTTGAAGGTTGGTAAGAATGATGATTGCATCCCCCATAACGGAAGGTGGAATTTTAATAAGAAGACACTTCTACAAGCATCACATATTGATTATTGGGCTGTTGTCAACTTTTCTGCAAGTTGTGATACTAGTTACATATCAAGGGAGCTGATCAGATGTGGAATGAGCAAGGGCATTAACATTGAACGGCCATATACTTTGATAGAGGAGGAACCACAGTTGAGAAAATCTCACCCTGTTGCAAGGGTTGAAAGAATGTTTGACCTGCTTGCATCAAAACTGAATAGAGAGCCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAATTTGTGATATATATGGGCCTTGGAAAAAGAAGTGTCTGAGTGAAATTGGTGTTGTCACACAGTGCATTGCCCCTGTCAAGATCACTAATCAATACCTTACTAATGTTCTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCAATAGAGCATTCTGGGCATCTTCCCCTGATTAAAGATACCCCAACGATGATTTTGGGGATGGATGTCTCTCACAATTCACTTGGTCGATTAGATAGTCCATCAATAGCAGCTGTTGTTGGATCTCGACATTGGCCACTGATTTCAAGGTATAGAGCGTCTGTGAGAATGCAGGCATCCAAGGTGGAGATGATTGATGCTCTATACAAGCCATTGGAAAATGGGAGTGATGATGGTATTATCAGAGAATTGCTTTTAGATTTCTATGATTCTAGTAATGGACGCAAGCCAACTCAATTTATTGTATTCAGGGATGGAGTTAGTGAATCACAATTCGAACAAGTTTTAACTATCGAGCTTAACCAGATAATCAAGGCCTATCAACATCTTGGTGAGGTTAATGTTCCCCAGTTCACTGTGATTGTGGCACAAAAAAAGCATCATATTAAGCTGTTTCTGCCTAATGGCCCAGAAAATGTTCCTCCTGGGACGGTTGTGGATACAACAATCACGCATCCAAGAAATTATGATTTTTACATGTGTGCTCATGCAGGGATGCTTGGAACATCCAGGCCTGTACATTATCATGTGCTACTTGATGAGATTGGTTTCTCGGCAGATGGCTTGCAAAATTTGATCCATTCGTTGTCCTATGTGAACCAAAGGAGCACAATTGCAACCTCAGTTGTGGCACCCATATGCTATGCTCACCATGCTGCAGCTCAGATGGGACAACTTTTGAATTTTGATGATTCATCAGAAACAGGTTCAAGTCCTGCTTCAGAGGGAGGCATCCCCATCCCAGAGCTTCCAAGGTTGCACAGGAATGTCAGGAGTTCCATGTTCTTCTGTTGA 2745 0.4044 MEVAITRAKGGMTEEVPGIVEAAEPPTSSQSPADVPHNLETEQMTPTKYSIISRNGVGTTGKHIPLLVNLFEVAVNVPDTVFFQYSVAITFEDKQAVESKGIGRKVIDRLYQTYSSELGGKRFVYDGGKTLYTVGPLPLNKYEFKVLLEKSFTKRSSAKSPGANGSLHEETKRSKHSFQSKTFMVEISFATKIPLQSIVISLKEVESDTNSQDALRVLDTILRQRAANCGCLLVRQSFFHDDSRNFNDVGAGVTAVSGFHSSFRSTQRGLSLNIDVSTTIIIKPGPVIDFLLSNQQVKEPRYIDWEKAKKMLKNLRVQATHHNQEFKISGLSEKPCIQQLFSMKVKNDDNNSRGQTVDITVYEYFAKHCGIELTSSAYLPCLDVGKPKRPVYLPLELCSLVSLQRYTKVLSLMQRASLVEKSRQKPQDRIKILKSAVGKCYDDDPVLAACGISIEKQLNLIEGRVLETPKLKVGKNDDCIPHNGRWNFNKKTLLQASHIDYWAVVNFSASCDTSYISRELIRCGMSKGINIERPYTLIEEEPQLRKSHPVARVERMFDLLASKLNREPKLILCVLPERKICDIYGPWKKKCLSEIGVVTQCIAPVKITNQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDTPTMILGMDVSHNSLGRLDSPSIAAVVGSRHWPLISRYRASVRMQASKVEMIDALYKPLENGSDDGIIRELLLDFYDSSNGRKPTQFIVFRDGVSESQFEQVLTIELNQIIKAYQHLGEVNVPQFTVIVAQKKHHIKLFLPNGPENVPPGTVVDTTITHPRNYDFYMCAHAGMLGTSRPVHYHVLLDEIGFSADGLQNLIHSLSYVNQRSTIATSVVAPICYAHHAAAQMGQLLNFDDSSETGSSPASEGGIPIPELPRLHRNVRSSMFFC* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2235 914 Pfam PAZ domain 288 418 IPR003100 GO:0005515
Gso11g2235 914 Gene3D - 465 631 - -
Gso11g2235 914 SUPERFAMILY PAZ domain 279 437 IPR036085 GO:0005515
Gso11g2235 914 Pfam Argonaute linker 1 domain 234 283 IPR014811 -
Gso11g2235 914 Gene3D paz domain 278 406 - -
Gso11g2235 914 MobiDBLite consensus disorder prediction 880 899 - -
Gso11g2235 914 Gene3D - 637 914 IPR036397 GO:0003676
Gso11g2235 914 SMART PAZ_2_a_3 285 427 IPR003100 GO:0005515
Gso11g2235 914 SUPERFAMILY Ribonuclease H-like 554 878 IPR012337 -
Gso11g2235 914 CDD Piwi_ago-like 445 872 IPR045246 -
Gso11g2235 914 CDD PAZ_argonaute_like 284 401 - -
Gso11g2235 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 913 - -
Gso11g2235 914 SMART DUF1785_2 232 284 IPR014811 -
Gso11g2235 914 PANTHER PROTEIN ARGONAUTE 6 43 913 - -
Gso11g2235 914 Pfam Piwi domain 570 877 IPR003165 GO:0003676
Gso11g2235 914 ProSiteProfiles PAZ domain profile. 309 402 IPR003100 GO:0005515
Gso11g2235 914 Pfam N-terminal domain of argonaute 62 222 IPR032474 -
Gso11g2235 914 SMART Piwi_a_2 570 878 IPR003165 GO:0003676
Gso11g2235 914 ProSiteProfiles Piwi domain profile. 570 878 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2235 Gso-Chr11 38057941 38070647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2235 54 914 Eukaryotic Initiation Factors Gene Family AT5G43810 35.809 1.67e-157 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2235 K11593 - gmx:100778875 1813.51