Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Gso11g2208
ATGGAAGAAGGGTTGTGTCAAAACTCAATTCCTGGTTCAGGTTTTGTTGATAAAACTAGGATTGTAGAGGCTAAACCCCTTCGTAGTTTGGCACCTGTGTTGCCAAAATCTCTTCAATCTTCCTTCTCTGGCCGGTATCCGTCTGTCTTTCCTCCATTTGTTTTGTTTGATGAACCTCAAGAGTCTCAACCATCACCTGCTCCCATGCCGGCTCCATTAAGGTCCTATAGGAATCCACTAGATGAAGAAGAAGCCCCTCATGGATCCAATGGAGAGACTTCTTCACCCATGGAGGGTCTCAACGGTAATAGCGTTGACAATAGCCAAAAGCGCGCTGTGCCGCCTATGCACAGCTGCAAATATTCCCAAAAGAGGAGTAAGAAAACTAAGGAGTCACAGTTTGATTTGAGTCCTTCAGTTGGTGGTATCAGTGTGGCCACAAGGGAAGATGGTGATCGCGAATTGGTTAATCTTGTGCTCATGACTTATGATTCTCTTCGGAGAAGGCTCTGCCAACTTGAAGATGCCAAGGAGTTGAACACAACGATGGCAATCAAGCGTGCAGATTTAAGAGCAAGCAATGCAATGACAGTCAAAGCATTTAGAACAAACACGAGGAGGAGAGTAGGAGCAGTGCCTGGGGTTGAGATTGGGGACATTTTCTTTTTGCGGATGGAAATGTGTCTTGTGGGTTTACATGGCCAGTCGATGAGCGGAATTGACTACATGACCATCAAGGATGAGCTTCAGGAGGAACCAGTGGCTCTAAGCATTGTTTCATCAGGAGTATATGATAATGACGCCGAGGATAATGATGTTTTAATTTATACTGGTCAGGGTGAGAACTTCAACAAGAAAGATAAACACGTGATTGATCAGAAACTTCAAAGGGGTAATCTTGCTTTAGATAGAAGTTCACGACGCCACAATGAAGTAAGAGTCATCCGGGGTTTGAGAGATGCTGCCAACAAAAATGCAAAAATTTATGTCTATGATGGTCTGTATAAAATCCAGGATTCTTGGATAGAAAGAGGGAAATCTGGTGGTGGTGTATTTAAGTATAAGTTTGTTAGATTGCCTGGACAATCCAGTGCTTTCGCTGTTTGGAAATCGGTTCAGAAGTGGAAAATGAGCTCAAGCACATCTTCAAGGACTGGTATTATTCTTGCAGACCTCTCTACAGGAGTTGAGAGTATTCCTGTATCACTTGTCAATGAAGTTGACAATGAGAAGGGCCCTTCTTTTTTCACTTATTTCCATTCTCTCAGAGATCCAAAACCATTCAGTTTAGCACAATCATCATATGGCTGCAACTGTAACAAAACATGTGTCCCTGGGGATTTGAGCTGCTCTTGCATTCAAAGAAATGAAGGTGACTTTCCATATACTGCAAATGGTGTCCTAGTGAGTCGGAAACCATTGGTTCATGAGTGTGGCCCATTGTGTAAGTGTTTTCCTAACTGCAAGAATCGAGTATCCCAGACTGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAAGATAGAGGGTGGGGACTTAGATCACTGGATCCTATACGTGCTGGTACTTTTATTTGTGAGTATGCAGGAGAAGTTATTGACATTGCCAAGGTAAATAAGAATAGGGGATATGATGATGAGTATGTTTTTGATACAAGCCGTATTTACGATACATTCAAATGGAATTATGAACCTAGCTTATTGGAAGAAATAAGCTCAAATGTCTCTAGTGAGGATTATGATATACCGTCTCCTCTAATTATCAGTTCTAAGAAATTTGGAAATGTGGCTAGATACATGAATCATAGTTGCTCCCCAAATGTTTTCTGGCAGCCAGTCTTGTATGCAGAAAATAATCAATCCTTTCTTCACATTGCATTTTTTGCCCTCAGACACATTCCTCCTATGACAGAGTTAACATATGATTATGGCTGTTCTGGTCATGCTGATGGTAGCAGTGCACCCAAAGGGAGAAAGAAATGCTCATGTGGATCATCAAAATGCCGTGGTTCTTTTGGTTGA
2022
0.4194
MEEGLCQNSIPGSGFVDKTRIVEAKPLRSLAPVLPKSLQSSFSGRYPSVFPPFVLFDEPQESQPSPAPMPAPLRSYRNPLDEEEAPHGSNGETSSPMEGLNGNSVDNSQKRAVPPMHSCKYSQKRSKKTKESQFDLSPSVGGISVATREDGDRELVNLVLMTYDSLRRRLCQLEDAKELNTTMAIKRADLRASNAMTVKAFRTNTRRRVGAVPGVEIGDIFFLRMEMCLVGLHGQSMSGIDYMTIKDELQEEPVALSIVSSGVYDNDAEDNDVLIYTGQGENFNKKDKHVIDQKLQRGNLALDRSSRRHNEVRVIRGLRDAANKNAKIYVYDGLYKIQDSWIERGKSGGGVFKYKFVRLPGQSSAFAVWKSVQKWKMSSSTSSRTGIILADLSTGVESIPVSLVNEVDNEKGPSFFTYFHSLRDPKPFSLAQSSYGCNCNKTCVPGDLSCSCIQRNEGDFPYTANGVLVSRKPLVHECGPLCKCFPNCKNRVSQTGLKHQMEVFKTKDRGWGLRSLDPIRAGTFICEYAGEVIDIAKVNKNRGYDDEYVFDTSRIYDTFKWNYEPSLLEEISSNVSSEDYDIPSPLIISSKKFGNVARYMNHSCSPNVFWQPVLYAENNQSFLHIAFFALRHIPPMTELTYDYGCSGHADGSSAPKGRKKCSCGSSKCRGSFG*
674
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Gso11g2208
673
ProSiteProfiles
Post-SET domain profile.
657
673
IPR003616
-
Gso11g2208
673
ProSiteProfiles
SET domain profile.
499
644
IPR001214
GO:0005515
Gso11g2208
673
SMART
G9a_1
205
362
IPR003105
-
Gso11g2208
673
Pfam
SAD/SRA domain
209
362
IPR003105
-
Gso11g2208
673
ProSiteProfiles
YDG domain profile.
210
358
IPR003105
-
Gso11g2208
673
MobiDBLite
consensus disorder prediction
89
111
-
-
Gso11g2208
673
SUPERFAMILY
SET domain
398
670
IPR046341
-
Gso11g2208
673
MobiDBLite
consensus disorder prediction
57
138
-
-
Gso11g2208
673
SMART
set_7
499
650
IPR001214
GO:0005515
Gso11g2208
673
ProSiteProfiles
Pre-SET domain profile.
435
496
IPR007728
GO:0005634|GO:0008270|GO:0018024|GO:0034968
Showing 1 to 10 of 19 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Gso11g2208
Gso-Chr11
37719984
37726336
Dispersed/Wgd
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Gso11g2208
12
673
Su(var)3-9 homologs
AT5G04940
50.702
0.0
673
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TR
SET
Gso11g2208
SAD_SRA
1.9e-47
CL0178
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Gso11g2208
K24405
-
gmx:100800651
1337.01
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Event-related genes
Show
10
25
50
100
entries
Search:
Select
Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Gso15g1889
15
41137452
41149177
Gso11g2208
11
37719984
37726336
GST
Gso4g1034
4
15578441
15582831
Gso11g2208
11
37719984
37726336
PCT
Gso11g2208
11
37719984
37726336
Gso4g1034
4
15578441
15582831
PCT
Showing 1 to 3 of 3 entries
Previous
1
Next
Select All
Download Selected Rows