Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2186 ATGATATTGAGAAACCTGGAGGCATTTGAGCCTATTATTAAAGCAGGATGGAGGTTTTCTAAGTTCTACTGTTTTATACGCGTTACCAAAACCTATCTGATCGCCCCTGCTGTGACCTATGGTCCTAGCATGATTCCTACAATCGATTTGAAATCAGGTATGTTCTTAATGGAAAAGATCTCACCCCGGTTTGGTAAAGTTGCTCGTGGAGATATTGTAGTCTTGCGCAATCCTCAACACCCTAGGCACTTTATGACCAAACGTGTGGTTGGATTGGAGGGTGATAGTCTTACACGCATTTCCTCTCCTGATAACAGTGATAAGTCTAAGACGATTGTGGTGCCAAAGGGTGCCGTTTGGGTTGAGGGAGATAACAAGTATAACAGCAATGATTCAAGAAAATTTGGTCCTGTTCCTTATGACCTTATTGATGGCAAGATGCTCTGGAGGTTAACGCCACTTAAAAAATTTGGACCTTTCTGGTATAAATGA 492 0.4187 MILRNLEAFEPIIKAGWRFSKFYCFIRVTKTYLIAPAVTYGPSMIPTIDLKSGMFLMEKISPRFGKVARGDIVVLRNPQHPRHFMTKRVVGLEGDSLTRISSPDNSDKSKTIVVPKGAVWVEGDNKYNSNDSRKFGPVPYDLIDGKMLWRLTPLKKFGPFWYK* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2186 163 ProSitePatterns Signal peptidases I signature 3. 119 132 IPR019758 GO:0004252|GO:0016021
Gso11g2186 163 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 1 161 - -
Gso11g2186 163 TIGRFAM sigpep_I_bact: signal peptidase I 24 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2186 163 Pfam Signal peptidase, peptidase S26 24 97 IPR019533 GO:0004252|GO:0006465
Gso11g2186 163 Pfam Signal peptidase, peptidase S26 109 148 IPR019533 GO:0004252|GO:0006465
Gso11g2186 163 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 1 161 - -
Gso11g2186 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 32 48 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2186 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 85 97 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2186 163 PRINTS Bacterial leader peptidase 1 (S26A) family signature 114 133 IPR000223 GO:0006508|GO:0008236|GO:0016020
Gso11g2186 163 Gene3D Umud Fragment, subunit A 29 162 - -
Gso11g2186 163 SUPERFAMILY LexA/Signal peptidase 31 161 IPR036286 -
Gso11g2186 163 CDD S26_SPase_I 36 146 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2186 Gso-Chr11 37459757 37461334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2186 44 160 MADS-box Gene Family AT1G29960 50.427 1.13e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2186 K09647 - gmx:100805997 300.441