Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2183 ATGGAAGAGGAGACGATGGTGACGTGGAGCACCTGGGAGGAGCTTCTCCTTGGTGGAGCGATTTCCCGGCACGGAACCCGAGATTGGACCGTCATTGCCGCCGAACTCAAGACCCGAACCGTTTCACCATGCATTTTCACACCCGAGGTTTGTAAAGCCAAATATGAAGAGTTGAATTTCCAGTATCCTGGGGGGTGCACGTCTTGGTTCGAGGAGCTTAAGAAGAAAAGAGTGGCAGAGCTTAAGAGAGATTTGAAGCAATCTGAGGAAGTAATTGGGTCCCTTGAGATGAAGATTGAAACCCTTAAGGCTGGAAGGGATGAGAAAAGAGATGATTGCCATGTTGACAATGGCTCGGCTGAACCAGAGTTAAATGTTCCTTCTCATAAGTTGGATAGAGTTAACGATTCTCCAAAAGAGATGTCAAAGGATGGGTTATCTGCAGGGAGTTTCACACATGAAACTAAGACAAACTGGACTCATGAATGCCAGATTCCGGCAACATCTTGTGAAGATGTGGCGACCAAGCCTGAAGCATCAGGGTCCACTAAGCAGGAGAAAGTTTTGAATGTAGATAAGTTGGCTAACATTGTATATCAAGAACATGGAGGGTGTTTGAAAAAACCGAGAGGGAAGAGAAAGAGGAAGGATTGTAGCAGAAGTATTAACGAAGTAAGTGTAAGAGAAAGTGATTTTTCAGCTGATGTGTGTAAAGAAAGTTCTCTCAGCTACTGTGGCGAGATTGTTAAATCTTCTGGTGTGAATGAGGAGAATGCAAACTTGAAAACGGCTGGAATAAAAGATTTGATGGAGCTCTTAGATTCTTTTTTGGTAGTTCAAGGTGCTTCTGTCTTCACTTATAAGCATGATAACCAGAAGCAAGGAAGATACGAGAAATTGATCCGGCAGCATGTGGATTTTGACACCATAAAGTCAAGAATCCACAACGGAACAATCAAGTCCGTGGTAGAACTTTTAAGAGACTTGCTACTCCTGAGCAACAATGCTCTAGTGTTCTACTCCAAGAACACTCGTGAACACAAAACTGGTCTACAACTTAGAGACCTTGTCATCAAAACATTGACGGAGAAACTCGAGAGTTCTAGCACATCACCTGTGGGTGATCCTTCCGTGAATGTCATAAGCACACGTTCTAGCACATCGTATCTGCGTGATTCTTCAGCTAGAGTCAGAAGCATGCCTTCTACATCGCCTGTACGTGATTCGTCAGTGAAAGTCAGAAGCATGCGCCCTGGTAACCGCAAGATTGTTGCAAAGGTAGCTGGTGGCAGCAGCTCGGCTGAAAGGGTCTTAGTTGGAGCTAAGAAAGCTAACAAAGTAGATACTATACCAGCTGAAAGGGTCTCAGCTGCAGTTAAGAAAGCTAACAAAGTGGATTCTCCACCTTCAGTGGAATCCTTAAGCATCAAGAAAGCTTGTGGTGGTAGAACAAGAACGGTTGGACATGAAAGTGCAGTCAAGAGAAATGCAACACCAAGGAATGATAGGAAAAGGATAGCAAAGTGA 1527 0.4427 MEEETMVTWSTWEELLLGGAISRHGTRDWTVIAAELKTRTVSPCIFTPEVCKAKYEELNFQYPGGCTSWFEELKKKRVAELKRDLKQSEEVIGSLEMKIETLKAGRDEKRDDCHVDNGSAEPELNVPSHKLDRVNDSPKEMSKDGLSAGSFTHETKTNWTHECQIPATSCEDVATKPEASGSTKQEKVLNVDKLANIVYQEHGGCLKKPRGKRKRKDCSRSINEVSVRESDFSADVCKESSLSYCGEIVKSSGVNEENANLKTAGIKDLMELLDSFLVVQGASVFTYKHDNQKQGRYEKLIRQHVDFDTIKSRIHNGTIKSVVELLRDLLLLSNNALVFYSKNTREHKTGLQLRDLVIKTLTEKLESSSTSPVGDPSVNVISTRSSTSYLRDSSARVRSMPSTSPVRDSSVKVRSMRPGNRKIVAKVAGGSSSAERVLVGAKKANKVDTIPAERVSAAVKKANKVDSPPSVESLSIKKACGGRTRTVGHESAVKRNATPRNDRKRIAK* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2183 508 PANTHER BROMODOMAIN PROTEIN 1 508 - -
Gso11g2183 508 MobiDBLite consensus disorder prediction 391 415 - -
Gso11g2183 508 MobiDBLite consensus disorder prediction 482 508 - -
Gso11g2183 508 MobiDBLite consensus disorder prediction 391 410 - -
Gso11g2183 508 CDD SANT 8 58 IPR001005 -
Gso11g2183 508 Pfam Bromodomain 272 348 IPR001487 GO:0005515
Gso11g2183 508 SMART bromo_6 262 366 IPR001487 GO:0005515
Gso11g2183 508 Pfam Myb-like DNA-binding domain 8 45 IPR001005 -
Gso11g2183 508 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 508 - -
Gso11g2183 508 Coils Coil 71 98 - -
Gso11g2183 508 Gene3D - 260 373 IPR036427 GO:0005515
Gso11g2183 508 ProSiteProfiles Bromodomain profile. 285 347 IPR001487 GO:0005515
Gso11g2183 508 SUPERFAMILY Homeodomain-like 8 45 IPR009057 -
Gso11g2183 508 MobiDBLite consensus disorder prediction 108 150 - -
Gso11g2183 508 CDD Bromodomain 266 361 - -
Gso11g2183 508 MobiDBLite consensus disorder prediction 126 140 - -
Gso11g2183 508 SUPERFAMILY Bromodomain 267 365 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2183 Gso-Chr11 37444197 37448789 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso11g2183 Bromodomain 8.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2183 - - gmx:100804023 984.556