Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2179 ATGGCGGATGCTGATGTGGACCTTTCGGGATTGTTCACCGGTAATGCCGACGAAGACGACGACATGTTTTATATAGATATGCAGACGGTCCAGAAGGTTCTTGATGAAGACGACGATTGTTACTTTCAGGAGAGTAGTCCCGAGGATTCTTCATCAAAAGATGTTTCACCTAGTGAATCCGGCATTCATGACACTTTTCAGATACAAAATGATTCAGTCACGAGCTGTTCTCCATTCTTCTCAGATGTGTCAGATTCTGGGGTCAGATGTTCAGTTGGTGTATCTGATTCTGCAGCAAATTCTATGCTAGATTGTGAACGTGAAAGTGAACGTGAAAACCGGGGACCTCAATCTCAGGCTTGCTCTTCCCCAAAAGCTTTTCCTGGTAATTTCAGTGACTCATTCTCTCCAGGTGAAAGTCATGAGGTTTTCTGCACAGAAAGGACCGGAGTTTTTAAACACGAGATACCTGCTTATAGTGTAGAAGCAAGTTTCCCCAAGGCACAGTCAAACAAAATATCAATTTGTGGAGATAATTTGAATCTGAGTATGTGGATTGGTGAAAATGAGAGTCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGATGATGTAAATGCTGAAGACATCATTACCGGAGTTTCTGGGCAACAGGAAAATGACTCATGTACATCTTTTGAAGCATCATTTATGGATGCTGATAGATCTTTGCATGTCACTACCTCAACTGATTCTACTATTGGTCAAGGTTCCCATGTTTCCAGTGATTTCATTGACTACCATGTATCTTCAAACTGTTACCAGGGAACATATCATGGACCCTTTGTTGCTGACTCTTCTCTTGGTTTTGTGCCTAATGGTATTTATTCTCAATTGTGGCCAGATGAAGAAATGATGAATAACATTAAGGCTGAAAATGTGGAGTTAAATGCTGATATTGCATGTATGAGTAATGGCTTGCCCTCAAGCACTACTGGGTGGATGCCTTTTCAGGATAGTCAAATTATGTTAGCTGATAATGGTTATCCATCATTTCATTCTGGTAAAGTTAATGTTGATGACATGTCATCACTGTCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATTACCAAAACAATTTTCACTGTGATGATGCTGAGTTCAATGTAGGCCAAGAGGTGAAAGAAACACCTGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACCAATGTTTTGAGAATGAGAATAATTTTGCAGTTATATCTGGGATATCCAATCAATATCAAGATAGCATTGGTGGAACGGCTAGTTTTCAAGGAAACTTGGACAATTTGAATTTAAAAGCTGCAGATATATCTTGGACCCATCCCCAAGCACTAATTACCAATGAGCAGCAGTTTGGTAGTGTTAAGAGCGAAGGAGGGATTCAACATAACTTTATTAATTCTCATCTTTCAAAAGGAAGAACTGAGAATTTCTATGTTGAGGAAGACCCTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACGAGTCGATCTGCAGACATTGGGAATTCCCTTAATATATCTCAATCTTCTAGATATGTTGATTCCCAGTCTTACACGGTTGGAAGTACAAGGATGAAGGCATGTGATGAACGGAATATATTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGAAGGATTGCTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGGTTCAAAAGGAAACATCAAGTTTATATTGCTCAGGAGGAATTCTTGCAGACGATCAGGGACTTGGAAAAACAGTATCAACTATTGCATTAATATTAAAGGAAAGACCTCCATTACTTAATGGGTGCACCAATGCCCGAAAAAGTGAATTGGAAACTCTGAATCTGGATGTGGATGATGACGTGCTTCCTAAGACTGGTAGAGTAAAGGAAGAATCTAATATGTGTGAGGATAATCCAAGTAGATATCCAACCAAGAGCATGAGTTTGTTGAAGCAAGACAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGCTGCGTAGCAAGGTAAATGGTCAGGCAAGTCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTTTGAGGTGGCTAGGCATGATGTTGTCCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTCCAGCTGACAAAGATGACGAGGAAAAGGAAATTTTTGAAGACCCTGCCACAGCAAGTAGGAAAAGAAAAAGCCCTTCCAATTCTAGTAAAAGTGGCAAGAAAAAATTGGATGGCACAATTCTTGAAGGTGTTGCTCGGCCACTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGTATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGCAGATGGTGCTTGTCAGGGACTCCTATCCAGAATGCAATTGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATTCTGACTATGCATCATTTTGTACTAGAATTAAGAGCCAAATTACCAAAAACCCAGAAAATGGGTATAGAAAGTTACAAGCTGTTTTGAAGACAATAATGTTACGCCGGACCAAAGGTACACTTCTTGACGGGGAACCTATTATTTCCTTGCCGCCTAAGTATATAGAGCTGAAAAAAGTTGATTTTTCTATGGAGGAACGTGATTTCTATTCCAAACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTAAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTGCTTGTCAAGCGATACAATTCAAACTCTCTATGGAGATCTTCGGTTGAGATGGCAAAGAAGCTTCCTCAGGAAAAACAGATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGTAGCATTTGTAATGATCCTCCTGAAGATGCAGTTGTTTCAGTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACCGGCGATGACAATCAGTGCCCTGCTGCAAATTGCAAAAGTCGACTGAGCACATCTATGGTATTTTCAAAAACCACACTGAACAGTTGTCTTTCTGACCAGAGTTGTGATAATTCACCCAGTCGCTCTGGTTCTGAAGTGGAAGAATCTGAGCCTTGGTCTGAAAGTAAGCCATATGATTCTTCAAAAATAAAGGCTGCACTTGAGGTTTTGAAGTCATTGTGTAAGCCACAGTGCTGTACACCAAAAAGTACTTCTGAGCATGGCACTTTCAGGGAAGATAATGATTGCCCTAGGAACCCCTCCATTGCTAACAATGGGAAATCCTTAAAAGATTCTCTGGAGAGTCAAAATTTGTCTGATGAGAGTAGAAGCTCTAATGGTTCAGTTACTGTTGTAGGGGAGAAAGCTATTGTGTTTTCTCAGTGGACGAGGATGCTAGATTTGCTTGAAGCGTGTCTCAAGAATTCTTCGATTAACTATAGAAGGCTTGATGGAACAATGTCAGTTGTTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTTGTCCCGAGGTAACCGTGATAATTATGTCTTTGAAGGCCGCCAGTCTTGGTCTCAATTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTACGGTTAACCGTGAGAGATACAGTTGAAGATCGTATCCTAGATCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGACTCGGCTTACTGTGGATGATTTAAAATATTTGTTCATGATGTGA 4023 0.4131 MADADVDLSGLFTGNADEDDDMFYIDMQTVQKVLDEDDDCYFQESSPEDSSSKDVSPSESGIHDTFQIQNDSVTSCSPFFSDVSDSGVRCSVGVSDSAANSMLDCERESERENRGPQSQACSSPKAFPGNFSDSFSPGESHEVFCTERTGVFKHEIPAYSVEASFPKAQSNKISICGDNLNLSMWIGENESQFKHVGEDVESEHASLSSIVDNDDVNAEDIITGVSGQQENDSCTSFEASFMDADRSLHVTTSTDSTIGQGSHVSSDFIDYHVSSNCYQGTYHGPFVADSSLGFVPNGIYSQLWPDEEMMNNIKAENVELNADIACMSNGLPSSTTGWMPFQDSQIMLADNGYPSFHSGKVNVDDMSSLSLSACASYMSYGDHYQNNFHCDDAEFNVGQEVKETPGIFSSVGCQAYQCFENENNFAVISGISNQYQDSIGGTASFQGNLDNLNLKAADISWTHPQALITNEQQFGSVKSEGGIQHNFINSHLSKGRTENFYVEEDPDVCIIEDISHPAPTSRSADIGNSLNISQSSRYVDSQSYTVGSTRMKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLNGCTNARKSELETLNLDVDDDVLPKTGRVKEESNMCEDNPSRYPTKSMSLLKQDKGRPSAGTLIVCPTSVLRQWAEELRSKVNGQASLSVLVYHGSNRTKDPFEVARHDVVLTTYSIVSMEVPKQPPADKDDEEKEIFEDPATASRKRKSPSNSSKSGKKKLDGTILEGVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYSDYASFCTRIKSQITKNPENGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYIELKKVDFSMEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEMAKKLPQEKQISLLKCLEASLALCSICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPAANCKSRLSTSMVFSKTTLNSCLSDQSCDNSPSRSGSEVEESEPWSESKPYDSSKIKAALEVLKSLCKPQCCTPKSTSEHGTFREDNDCPRNPSIANNGKSLKDSLESQNLSDESRSSNGSVTVVGEKAIVFSQWTRMLDLLEACLKNSSINYRRLDGTMSVVARDKAVKDFNTCPEVTVIIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILDLQQKKRTMVASAFGEDGTGDRQTRLTVDDLKYLFMM* 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2179 1340 MobiDBLite consensus disorder prediction 36 62 - -
Gso11g2179 1340 ProSitePatterns Zinc finger RING-type signature. 1038 1047 IPR017907 -
Gso11g2179 1340 SMART ring_2 1023 1061 IPR001841 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 1133 1178 - -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 760 781 - -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 1150 1178 - -
Gso11g2179 1340 ProSiteProfiles Zinc finger RING-type profile. 1023 1062 IPR001841 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 1083 1098 - -
Gso11g2179 1340 Pfam Zinc finger, C3HC4 type (RING finger) 1023 1059 IPR018957 GO:0046872
Gso11g2179 1340 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1176 1335 IPR001650 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 103 134 - -
Gso11g2179 1340 Gene3D - 797 908 IPR038718 -
Gso11g2179 1340 Gene3D - 680 773 IPR038718 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 1083 1109 - -
Gso11g2179 1340 Pfam Helicase conserved C-terminal domain 1183 1282 IPR001650 -
Gso11g2179 1340 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 508 1339 - -
Gso11g2179 1340 Pfam SNF2-related domain 605 984 IPR000330 GO:0005524|GO:0140658
Gso11g2179 1340 MobiDBLite consensus disorder prediction 757 796 - -
Gso11g2179 1340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1008 1120 IPR013083 -
Gso11g2179 1340 SUPERFAMILY RING/U-box 1020 1080 - -
Gso11g2179 1340 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 600 869 IPR014001 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 45 62 - -
Gso11g2179 1340 CDD SF2_C_SNF 1185 1292 - -
Gso11g2179 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 907 IPR027417 -
Gso11g2179 1340 Gene3D - 1169 1335 IPR027417 -
Gso11g2179 1340 Gene3D - 553 645 IPR038718 -
Gso11g2179 1340 MobiDBLite consensus disorder prediction 115 134 - -
Gso11g2179 1340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 915 1339 IPR027417 -
Gso11g2179 1340 CDD DEXDc_SHPRH-like 585 907 - -
Gso11g2179 1340 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 508 1339 - -
Gso11g2179 1340 SMART helicmild6 1199 1282 IPR001650 -
Gso11g2179 1340 SMART ultradead3 581 884 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2179 Gso-Chr11 37367839 37376669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2179 508 1339 RAD5 or RAD16-like Gene Family AT1G61140 61.190 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso11g2179 SNF2_N 4.9e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2179 - - gmx:100802436 2634.37