Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2148 ATGAACCTTTTTAGGCAACAGCTAGAGAGTACTTTTAAATTATCAAGCATGGCTGATAATTATAATGTGTTAGAGCTCAACATTGGTTTAGGCAACAACAACAACAGCAAAGTTGGTGGTCATGCAGGGCAATCACCAAGGCAAAGGTGCCCTGCACCGTTTCTGTTGAAAACATACGAATTGTTGGAAGAATTAAGTGAGAATGAAAAAGATAGCACCAAAATTGTGTCGTGGAATGCAGAAGGAACTGGCTTTGTTGTGTGGTCCCCAGCTGAGTTCTCTGAGCTCACCTTGCCCAGATATTTCAAGCACAACAACTTCTCTAGCTTCATTCGCCAATTGAATACATATGGATTTAAGAAAATATCCTCCAAAAAATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCACATACTAGGCGAAATCACGAGGAAAAAGTGCGAGCCAAGTGTGTTTCCTGCATACCTAAAGTCTTCTTCTGAGGAAAATAATGCAACGAGTTCCATGGAAGAAAACAATGATCATCATCAACTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTACAAATGCAGATAGATGAATGCAAAACACTTGAAATGAAGTTGTTGGAATGTCTCTCTCAATTTATGGACAGCCACCAAAATAAAGTTAGGAGACTATGTTAA 690 0.3971 MNLFRQQLESTFKLSSMADNYNVLELNIGLGNNNNSKVGGHAGQSPRQRCPAPFLLKTYELLEELSENEKDSTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKKWEFKHEKFQRGCRHILGEITRKKCEPSVFPAYLKSSSEENNATSSMEENNDHHQLLMEENKNLKKERLELQMQIDECKTLEMKLLECLSQFMDSHQNKVRRLC* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2148 229 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 41 229 - -
Gso11g2148 229 Pfam HSF-type DNA-binding 54 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2148 229 SUPERFAMILY "Winged helix" DNA-binding domain 51 148 IPR036390 -
Gso11g2148 229 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 41 229 IPR027725 -
Gso11g2148 229 Coils Coil 172 209 - -
Gso11g2148 229 Gene3D - 46 149 IPR036388 -
Gso11g2148 229 SMART hsfneu3 50 148 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gso11g2148 229 ProSitePatterns HSF-type DNA-binding domain signature. 98 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2148 Gso-Chr11 37005129 37007522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2148 42 221 HSF AT5G62020 35.238 4.93e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gso11g2148 HSF_DNA-bind 3.7e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2148 K09419 - gmx:100783723 417.157