Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2146 ATGGCCTTTGAGGAGCACTATGTTTCTCAGGAATTGAAAACCATCCCCAGCCCCATGACAGTGACAGAAAATTTGGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTGGTCACCCTTTGTGGCCACCTATACTGCTGGCCCTGCATCTACAAGTGGCTCCATGTCCAAAGTGCTTCTCTTGCACCAGATGAGCACCCACAATGCCCTGTTTGCAAAGATGACATATGCCACACCACAATGGTTCCTCTCTATGGCCGTGGCCAGGGCATAGCTCATAGTGACCATGATGGAAAGGCATCATCCTATAGAGGCAGTTGTATACCACCAAGACCACCTGCTTTGGGTGCTCAATCGCTCATTGCAACATCATCTCAAAGTGTTCCATATCGCAACACTTATCAAAATCAGCATTTATACCAAGAAGAGGATGCATCATCATCACAAATGCTGAACCCTGGTGCCACCATTTTGGCACCAGGGTTCCCCCACCTTGTGTTTGGGATGTTTGGAGAGATGTTTTATACCAGAGTCTTTGGGAACTCGGAAAATTTATACACCCACCCAAATTCTTATCACCTGGGGGAAAGTAATAATAGTCCCAGGTTGAGAAGGCAAGAGATGCAAGCAAACAAATCATTGAACAGAATTTCAATTTTTCTGTTTTGTTGTTTCCTTCTGTGTCTAATCGTTTTCTGA 714 0.4482 MAFEEHYVSQELKTIPSPMTVTENLDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYKWLHVQSASLAPDEHPQCPVCKDDICHTTMVPLYGRGQGIAHSDHDGKASSYRGSCIPPRPPALGAQSLIATSSQSVPYRNTYQNQHLYQEEDASSSQMLNPGATILAPGFPHLVFGMFGEMFYTRVFGNSENLYTHPNSYHLGESNNSPRLRRQEMQANKSLNRISIFLFCCFLLCLIVF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2146 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 5 237 - -
Gso11g2146 237 Pfam Zinc finger, C3HC4 type (RING finger) 31 77 IPR018957 GO:0046872
Gso11g2146 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Gso11g2146 237 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Gso11g2146 237 SMART ring_2 31 77 IPR001841 -
Gso11g2146 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 237 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gso11g2146 237 CDD RING-HC_AtRMA_like 29 78 - -
Gso11g2146 237 ProSiteProfiles Zinc finger RING-type profile. 31 78 IPR001841 -
Gso11g2146 237 SUPERFAMILY RING/U-box 23 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2146 Gso-Chr11 36975308 36978010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2146 8 223 C3H Transcription Factor Family AT4G27470 38.667 1.58e-46 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2146 K10666 - gmx:100782827 478.018