Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2136 ATGGAGAACAACCCTAGTTCATCATCAAGAACTGATAGAAAATTCATTGAACAGAATAGAAGAAATCATATGAAGGATCTTTTCTTCAAGCTCAACTCAGTTGTGCCTCATCAAAGCTCAAGGGAGGCCATTTCGCGGCCGGATCAGATAGGTGAAGCCACAAATTACATAAAGAATTTACAGATTAAATTAGAGAAAATGAAGGAGAAAAAGAACAACCTAATAGACATTAAAAGATCAAAAAATGTTAGCATGAATATGGGATTGTTGAAGTCTCCACAATTTAAAATCCAACAAATGGGTTCAACTTTAGAGGTTTTTCTAATAACTGGGTTGGATTGTCAATTCATGTTCAATGAGACCGTTCGTGTTCTTCAAGAAGAAGGATCAGATGTTGTTAATGCCAGTTATACCGTTGTTGAAAATGAAGTTTTTCATACAATACACTGTCAGGTAGGGGAATCTGCAAATGGAGCTTTGAGGATATCTGAGAAATTAAAGAAGTATTTCAATGGCTGA 519 0.3545 MENNPSSSSRTDRKFIEQNRRNHMKDLFFKLNSVVPHQSSREAISRPDQIGEATNYIKNLQIKLEKMKEKKNNLIDIKRSKNVSMNMGLLKSPQFKIQQMGSTLEVFLITGLDCQFMFNETVRVLQEEGSDVVNASYTVVENEVFHTIHCQVGESANGALRISEKLKKYFNG* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2136 172 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 74 IPR036638 GO:0046983
Gso11g2136 172 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 IPR015660 GO:0003700|GO:0006357
Gso11g2136 172 SMART finulus 14 66 IPR011598 GO:0046983
Gso11g2136 172 Pfam Helix-loop-helix DNA-binding domain 10 61 IPR011598 GO:0046983
Gso11g2136 172 Coils Coil 50 77 - -
Gso11g2136 172 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 8 60 IPR011598 GO:0046983
Gso11g2136 172 PANTHER TRANSCRIPTION FACTOR BHLH162 4 171 - -
Gso11g2136 172 Gene3D - 2 87 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2136 Gso-Chr11 36884308 36885300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2136 3 172 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 40.437 1.30e-43 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso11g2136 HLH 9.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2136 - - gmx:100789728 325.865