Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2124 ATGGACACAAGCAGGTCTGAGGGAAAAAGGGTCATGAGGTACAAAGAAGAAGATGATGATAATGATGATGAAGAAGAAGAGGTGGTGAGTGAGATGGGTTTTGAAGAAGATGGAAGGAGGAATAAGAGAGTAATAAGAGATCTCTATGGAAAGAGAGGGTCCAAAGGTGGAGGCTCAATAACACCTTCTTGCCAAGTGGACAATTGTGATGCTGATCTGAGTGAAGCTAAGCAGTACCACAGAAGACACAAGGTTTGTGAGTACCATGCCAAGGCTCCTTCCGTACACATGGCAGGGCTGCAACAAAGGTTTTGCCAACAATGTAGCAGATTCCATGTGCTATCAGAATTTGATGACTCAAAGAGGAGTTGTAGAACGCGGTTGGCTGGGCATAATGAGAGGCGTCGCAAATATGCAGTTGACTAG 426 0.4507 MDTSRSEGKRVMRYKEEDDDNDDEEEEVVSEMGFEEDGRRNKRVIRDLYGKRGSKGGGSITPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPSVHMAGLQQRFCQQCSRFHVLSEFDDSKRSCRTRLAGHNERRRKYAVD* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2124 141 Gene3D - 54 125 IPR036893 GO:0003677|GO:0005634
Gso11g2124 141 MobiDBLite consensus disorder prediction 1 36 - -
Gso11g2124 141 PIRSF SBP 1 141 IPR017238 GO:0003677|GO:0003700|GO:0009908
Gso11g2124 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 137 IPR044817 GO:0003677
Gso11g2124 141 MobiDBLite consensus disorder prediction 1 17 - -
Gso11g2124 141 MobiDBLite consensus disorder prediction 18 32 - -
Gso11g2124 141 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 137 - -
Gso11g2124 141 SUPERFAMILY SBT domain 62 139 IPR036893 GO:0003677|GO:0005634
Gso11g2124 141 Pfam SBP domain 64 137 IPR004333 GO:0003677
Gso11g2124 141 ProSiteProfiles Zinc finger SBP-type profile. 61 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2124 Gso-Chr11 36779049 36781185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2124 55 141 SBP-box Gene Family AT2G33810 68.889 1.05e-41 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gso11g2124 SBP 8.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2124 - - gmx:100527199 262.692