Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2123 ATGTCACCAAAAAGGCTCCCTCACCAAACTTCAGCAAAACTTGCTCTTAGAAACAACCATGAGCAACCCCAAGACGAAGTGCAACCCGAAGAAATTGATCAAAGTTGTTTGCTGAGCGATGAGTACAAGGATGAGAACAAAGACAAAAGCTTGTCAAATGAGAGACAAGAGTTTGAGAAAAAAGTAATAGCAACACAAAGTCTCCCTCAAGAGACTCCAACAGAGATTGCTCCCAGAAATGACCACGAGCAACTCGAAGCTGAAGTGCAACCTGTAGAAGAAGTTGACTTAGATCAAAGTTATTCGATGAGTGAGGGGGACAAGGATGAGGATGGGGATGAAGATGAGGATGAGGAAGAATATGTGACTATAGATTTGGCAAATTTGAAGGAATTGCGGTGTCCTATATGCCTAGGTATTCTCCGGAAAACAAAAGCAGTTATGGAATGCATGCACCGCTTCTGTGGAAAGTGCATAGAGAAATCCATGCGTCTTAGTAACAATGAATGTCCCGTTTGTCGTGTACACTGTCCTAGCCGTCGATCACTTAGAGATGACCCAAATTTTGATAATATAATTGCTGCTATATATCCGGATATTGACAAGTATGAGGAGGAGGAGGAATTGGCAATGTATGAGAGTGAAAGGACTCATAACAAAGAGGAATCTCCCACTATCGATGTGGATATAACTATTGGTGAAAGTATCCAAGACGTCAATAGAGAAATAAGTTCTTCTGCTGATAGTCACCAGAGTAACACTCGAGTGAGTGGTGATAATGGCATGAGTAGTCGTCTCTCTAGATTTATTAATCATTTACATAACTCGAATGTAAATGATGGTGAGTTGGACATCCCCCTTGTGCTTGTCTCTTTGGATGAGCAAAAGATGCCAACTTTACAAGAGCCATACCTTCATTGTAGGCCTACTTGTTCAGTGAAAATCTTGTGCAAGTATGTTGCACTTAAAGTTGAGCTCCTACCTAATGAAGTTGAACTAAGCTTGGTAGAAGAATCTCAAACCAATGTTATGCGAGATGAACTAATTGTTGATCCAAACAAGGATAAATTGCGTGTTTTAAGGGATGAAGAAACATTGGCTGACCTATACAAGCCAAACGTCACCAACTGCGGTCATTTGCTCCTGGCTTATAAGATGAAGTAG 1164 0.4098 MSPKRLPHQTSAKLALRNNHEQPQDEVQPEEIDQSCLLSDEYKDENKDKSLSNERQEFEKKVIATQSLPQETPTEIAPRNDHEQLEAEVQPVEEVDLDQSYSMSEGDKDEDGDEDEDEEEYVTIDLANLKELRCPICLGILRKTKAVMECMHRFCGKCIEKSMRLSNNECPVCRVHCPSRRSLRDDPNFDNIIAAIYPDIDKYEEEEELAMYESERTHNKEESPTIDVDITIGESIQDVNREISSSADSHQSNTRVSGDNGMSSRLSRFINHLHNSNVNDGELDIPLVLVSLDEQKMPTLQEPYLHCRPTCSVKILCKYVALKVELLPNEVELSLVEESQTNVMRDELIVDPNKDKLRVLRDEETLADLYKPNVTNCGHLLLAYKMK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2123 387 Pfam Zinc finger, C3HC4 type (RING finger) 133 173 - -
Gso11g2123 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 203 IPR013083 -
Gso11g2123 387 SUPERFAMILY RING/U-box 129 208 - -
Gso11g2123 387 CDD RING-HC_RING1_like 134 174 - -
Gso11g2123 387 SMART ring_2 134 173 IPR001841 -
Gso11g2123 387 PANTHER OS11G0578200 PROTEIN 248 387 - -
Gso11g2123 387 PANTHER OS11G0578200 PROTEIN 68 227 - -
Gso11g2123 387 MobiDBLite consensus disorder prediction 1 119 - -
Gso11g2123 387 PANTHER OS11G0578200 PROTEIN 248 387 IPR044592 -
Gso11g2123 387 PANTHER OS11G0578200 PROTEIN 68 227 IPR044592 -
Gso11g2123 387 MobiDBLite consensus disorder prediction 1 18 - -
Gso11g2123 387 MobiDBLite consensus disorder prediction 36 61 - -
Gso11g2123 387 ProSitePatterns Zinc finger RING-type signature. 150 159 IPR017907 -
Gso11g2123 387 ProSiteProfiles Zinc finger RING-type profile. 134 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2123 Gso-Chr11 36754268 36760449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2123 132 265 C3H Transcription Factor Family AT2G30580 27.338 6.04e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2123 K10695 - gmx:102663277 216.083