Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2106 ATGGAGAGCGAGGCTTGTTCAGAGGGAGAGAATAATCTGAAAAGGGGTGGCACTGATGATGATAGCAATGAGAATAACAACAACAATAACAATAACGGAAGCAGTGGAAAGATTGTGAATTGTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCCTTTCAACTTGAAACCCTCGAGAAGGCTTATGCTGTGGATAATTACCCTTCGGAGACGATGAGGGTGGAGCTGTCTGAGAAATTGGGGTTGTCAGATCGACAGCTTCAGATGTGGTTCTGCCACAGGAGGTTGAAGGACAAGAAGGACTTGCCGTCTAAGAAGCCACCGAGGAAGGTGCTGGCAGAGCCATTGCCGGATTCGCCAAGGGATGACCCTAGGTTGGGCCTTGAGCTTGCTAATGAGTATGGATCCGGGTCCGGTTCAGGTTCCAGCCCGTATGCCCGAGTGGAGCCCCTGAATGTGGCTCCTCTGGGTGTGCCTGGTTATTATGAGTCCCCACAGGCTAAGTTGGAGCATAGAGCAATTGCTTGTGTTGAGGCGCAGTTAGGGGAGCCATTGAGGGAGAATGGACCAATTCTAGGAGTAGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAGCAGCAGTTACAGAACAGCAGAAGCTACCTAGTTTTGCCTATGACAGTAAAATATATGAAAGACATGATGCTAGAACAAATAAGGCTATGGCAAGGACATTCCGTGACAATCAATTTCTACCAAACAAGTCTGCCATTAGGTCTGATGCTTCTGGACAGTTCAGCCAATCTCATTTACATGATCTAGTGGAAGGTTCTGTCAGAAATCCTCCTTTTGCACATGGAAATGAACATCTACCTAGAATTCATGCTACTAAAGGTCATTCTTCTCGTGTTCGTCTTTTGTCTCAACAAGACAAGCAATTGATTCCCTATCAATCTCCTTCTCGGGATGATGATGTTGCCCCCCAAAGGGAAATGTACCCAAACATAGCTAATGTTGGAAAGAACTCTCACTTTACTGATCACCAAATTGTTGGGCCAGAAAATCTCCATGCTCTACATAGTGGACAAGTTTTGCATAACAATGCAACACGGATTGAGAAGAAACGAAAGAGCGATGATGCCCAAGATGTTGAAGCCCATGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGGACAAGAAAAGAAATGGAGAGACAAGATCGTGAAAGAAAGAAGGAAGAAGAAAGATTGATGCGTGAGAGACAGCGAGAGGAGGAAAGAGCAAGACGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAAAGAAAATTTAAAAGCAGAGAAAATGAGGCAAAGAGAAGAGCTTCGCAAAGAGAGAGATGCAGAGAGAAGGAAAGCTGCTCTTGAGAAGGCGACTGCTCGTAGAATGGCCAAGGAATCTATGGAACTTATTGAGGATGAACAACTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTCTCCTCTATTGTCCATCTTGATTTTGATACTCTGCAACACCTTGAGTCATTTAGGGATTCATTGAGTGTTTTCCCACCAAAGAGTGTAAAGCTAAGAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAAAATAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTTATTAACTTTGCTGATGTTCTGGAGTTATGGTCTTTTACTCTAGATGAGTTTGTTCAAGCATTTCATGACTATGACTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAGCGAATCAAAATGGTGCTGCTAACTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGTTTTGACATACGAAATTGGCACAAGCACTTAAATCTGTTGACATGGCCAGAAATTTTCCGACAGCTAGCATTGTCTGCTGGATATGGACCACAGTTGAAGAAAAGAAGTATTTCATGGTCATATGCAAATAATAAAGACGAGGGCAGAAATTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCGGCTGAAAATGCAGTTGCAAAAATGCACGAGAGAGGTCTGTTAGCCCCTCGAAGATCTAGACATCGATTAACTCCTGGTACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTGAGAAAGGATTGAATGTACTAGAACTTGCAGAAAAAATTCAGAAATCTGGTCTTCGAGACTTGACGACCAGCAAGACACCTGAGGCATCGATTTCTGTTGCTTTAACAAGAGATGCCAAGCTTTTTGAAAGGATAGCTCCATCAACATATTGTGTACGTGAGGCATTTAGAAAGGATCCTGCTGATGCTGAGTCCATTCTTTCAGATGCAAGAAAGAAAATTCAGATATTTGAAAAAGGGTTTCTAGCTGGTGAGGATACCGATGATATTGAAAGAGAAGAGTCAGAAAGTGATGAAATTGATGAGGATCCTGAAGTTGATGATTTAGTAAATCTGTCAAGTGCTAACAGAACATCTGAACAGTGTGATGATTTCTCATCAAATGGAAAAGCAAATTTGGGTCATAATGTTGAACTTCAAGGTGAGTTTGATAAGGATCTACCTTGTTTTCCTGAGAGTGGTTCCAAGAATGCTGATGCTCCAATTGCTGTAACTGGACAACCTGGTGCTGTTGAAGATCTGAATGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCTTGGGCTTGCAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAACGTCTAAATGCTCTTGTTGTGTTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAACAAATGTGGGCCGAATCACAAGTAGATAAAGTTCGTCTAAAAGATGATACTTTCAGTAAATCCGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACAATACTCTTGTCCGGTCATGGAGGGCAAGCAAAGCCCATTGATTGGCATTAATATTGGCAACAACAACAATAATAATAATAATAATGTGCCCTCTCCCAGCATTGCAGAAAATCAAAAAGCAGTTTTTGGTGCACAGAGCCAGTCTATTGAAAAGCACTCTTCTGCTCAAGATCTATGCACTGGTCCAGATAACCCTCAGACTCAGTCACTTGGACAATATTCAAAAAGGTCACGTTCTCAGTGGAAATCTTATATTTCCCACATGGCGGAAGAGATGTATGTCTACAGATCCTTACCCCTTGGGCAAGATCGCAGACGTAACCGTTATTGGCAATTTGTTGCATCCGCTTCTTCCAATGATCCTGGTTCTGGCAGGATATTTGTTGAATATCTTGATGGCTATTGGAGGCTTATTGATACTGAAGAGGCCTTTGATGCACTTCTGAATTCACTCGATTCACGTGGGATCAGGGAATCTCATTTGCGTCTAATGTTGCAAAAGGTTGAGAGTTCCTTTAAGGAAAATGTTCGTAAGAATACCCAATGTTCCAAAATTGGAAGCATAGGTGAAACATGTGTTAAAAATGAAGCTGATGAAACAGATTCCAGTCCTGATCGGCATACTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCTTGAACTCTGACACTTCAGAAACTTCATCATCCTTCAAAATCGAGCTTGGGAAAAGTGAGAGTGACAAGAAATCGGCCTTGAGAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACTCATCTATATTGTGTGCAATGAAATATGGGAAGAAGAGATGCAAACCTCAGGTTGTCATGTGTGATATCTGTCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAGTGGTTGCCACCGGACATTTCCCTCAAATAGTGGATTTAGTTTTTCTAAACATGCATTTCAATGTGGAGATAAATCATCGAAAGATATTTGTATTTTGGATTCTCTTCCCTTGCGGACAAGATTGCTGAAGGCCATGCTAGCTTTTATTGAGGCATCTGTTCTGCCCGAAGCATTAAAATCAAATTGGACAGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGTAAATCATCTTCTATTGAGGAACTGCTACAGATATTGACCCTACTTGAGAGAGCATTGAAGCAAGACTTTTTATCATCAACCTTCTCTACAACAGGGGAACAGTTGGGTTTGAACAGTATGTCAAAGAGTGCTGCACAAACCTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACTGACCACTTCAGCTGTGTCTCTCAGACTTCTTGAGTTTGATGCATCCATTGTCTACGTACCGCATGAGAAACCTGAACCTTGTGAGGAGAAAGAAGATAGGGTATACATAAAGCTTCCTTCAAGATATAATCCTTCTAAATCTAGTAAAGTGGCTGAAGCAGCAGACTTGGACCGTGATGAATTCATGAAAGTTAAATCTGCTCCTGTGAAAATAGTGCAAAGCAACAATAAACGAGGACGAGGGAGCCGTGATAAAGGACGGGGTAAAAAGCTATCTAAAACCAAACAAAATACTGGCCGTCGTGGTGCTAAAGTTGCTGGGAATGCAGGTCAGAGGATTAAAAAACAGGGAGTGGGATCACAAGGACAAGCTGGTGGGCGTGGTCGCCGAACAGTTAGGAAAAGAAGAGTGGGGAAGAAGGCTGTTGAAGATTTGTTGATGGGCCATAGGGATGCCAGTCATAGCTCCAGCATTGGTAGAGAATCATTGAGAAGCTTGGATGATGACTGGGATGATGAAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCTAACAGTAATAACAGCATTGAAGAGGTTGAATCTGATGACAATGTCGAAGCAATGGAATCTGATGACAATGTTCAAGCAATGGAGTCTGATGACAAAGTCCAAGCAATGGAATCCGATGACAATGTCCAAGCAGCAGAATCTGATGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTGCCCCCAGCAGATGGAGTAGGGATTTGGTAGGAGGAATTAGCGATGAGGATGAGGATGAGGATGCGGAAGCTTCTGAAGATGACAATGACAATGGCATTGGCATTGAAAACAATGAGGAGGAGGATTCAGAGGCAGATGCTATGAGTGAGGAGGGTTCAGATGGTACTGCAAACAGAATTGTAAATGAAGAAAGCTCAGACTCGGATGTCTCTGAAGATTCTTCTGATTAG 5394 0.426 MESEACSEGENNLKRGGTDDDSNENNNNNNNNGSSGKIVNCNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPPRKVLAEPLPDSPRDDPRLGLELANEYGSGSGSGSSPYARVEPLNVAPLGVPGYYESPQAKLEHRAIACVEAQLGEPLRENGPILGVEFDPLPPDAFGAPIAAVTEQQKLPSFAYDSKIYERHDARTNKAMARTFRDNQFLPNKSAIRSDASGQFSQSHLHDLVEGSVRNPPFAHGNEHLPRIHATKGHSSRVRLLSQQDKQLIPYQSPSRDDDVAPQREMYPNIANVGKNSHFTDHQIVGPENLHALHSGQVLHNNATRIEKKRKSDDAQDVEAHEMKIRKELEKQDNLRRKSEERTRKEMERQDRERKKEEERLMRERQREEERARREQKREIERREKFLLKENLKAEKMRQREELRKERDAERRKAALEKATARRMAKESMELIEDEQLEMMELAASSKGFSSIVHLDFDTLQHLESFRDSLSVFPPKSVKLRKPFAIKPWINSENNVGNLLMVWRFFINFADVLELWSFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGANQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSISWSYANNKDEGRNCEDIISTLRNGSAAENAVAKMHERGLLAPRRSRHRLTPGTVKFAAFHVLSLEGEKGLNVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVREAFRKDPADAESILSDARKKIQIFEKGFLAGEDTDDIEREESESDEIDEDPEVDDLVNLSSANRTSEQCDDFSSNGKANLGHNVELQGEFDKDLPCFPESGSKNADAPIAVTGQPGAVEDLNVGNLGEDNMEIDESKPGESWVLGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAESQVDKVRLKDDTFSKSDFPSINGNKVEIQYSCPVMEGKQSPLIGINIGNNNNNNNNNVPSPSIAENQKAVFGAQSQSIEKHSSAQDLCTGPDNPQTQSLGQYSKRSRSQWKSYISHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYLDGYWRLIDTEEAFDALLNSLDSRGIRESHLRLMLQKVESSFKENVRKNTQCSKIGSIGETCVKNEADETDSSPDRHTGSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKSALRRYQDFQKWMWKECYNSSILCAMKYGKKRCKPQVVMCDICLNPYFFEDSHCSGCHRTFPSNSGFSFSKHAFQCGDKSSKDICILDSLPLRTRLLKAMLAFIEASVLPEALKSNWTEDIRRHWSVKLSKSSSIEELLQILTLLERALKQDFLSSTFSTTGEQLGLNSMSKSAAQTSTDPESVAVLPWVPLTTSAVSLRLLEFDASIVYVPHEKPEPCEEKEDRVYIKLPSRYNPSKSSKVAEAADLDRDEFMKVKSAPVKIVQSNNKRGRGSRDKGRGKKLSKTKQNTGRRGAKVAGNAGQRIKKQGVGSQGQAGGRGRRTVRKRRVGKKAVEDLLMGHRDASHSSSIGRESLRSLDDDWDDEKASPMTPIHMGAANSNNSIEEVESDDNVEAMESDDNVQAMESDDKVQAMESDDNVQAAESDDNGQAVEYDQGNWEIGFNGAPSRWSRDLVGGISDEDEDEDAEASEDDNDNGIGIENNEEEDSEADAMSEEGSDGTANRIVNEESSDSDVSEDSSD* 1798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2106 1797 Coils Coil 383 403 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1734 1770 - -
Gso11g2106 1797 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 988 IPR028942 -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1240 1260 - -
Gso11g2106 1797 CDD homeodomain 49 103 IPR001356 GO:0003677
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1229 1260 - -
Gso11g2106 1797 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1129 1201 IPR028941 -
Gso11g2106 1797 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1 56 - -
Gso11g2106 1797 Pfam Homeodomain 47 103 IPR001356 GO:0003677
Gso11g2106 1797 MobiDBLite consensus disorder prediction 22 53 - -
Gso11g2106 1797 ProSiteProfiles HARE-type HTH domain profile. 740 809 IPR007759 GO:0006355
Gso11g2106 1797 SMART testlast3 558 617 IPR018501 -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 841 859 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 7 21 - -
Gso11g2106 1797 Coils Coil 454 485 - -
Gso11g2106 1797 SMART HOX_1 46 108 IPR001356 GO:0003677
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1535 1604 - -
Gso11g2106 1797 Gene3D - 16 105 - -
Gso11g2106 1797 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 15 1797 IPR044977 GO:0006357
Gso11g2106 1797 Coils Coil 405 448 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 390 442 - -
Gso11g2106 1797 PANTHER HOMEOBOX DOMAIN PROTEIN 15 1797 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 102 146 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1550 1565 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 839 859 - -
Gso11g2106 1797 Pfam HB1, ASXL, restriction endonuclease HTH domain 740 808 IPR007759 GO:0006355
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1085 1108 - -
Gso11g2106 1797 SUPERFAMILY Homeodomain-like 36 103 IPR009057 -
Gso11g2106 1797 Pfam DDT domain 560 614 IPR018501 -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1618 1644 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 1618 1797 - -
Gso11g2106 1797 MobiDBLite consensus disorder prediction 102 131 - -
Gso11g2106 1797 ProSiteProfiles 'Homeobox' domain profile. 44 104 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2106 Gso-Chr11 36620898 36630661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2106 4 1771 Homeobox Transcription Factor Family AT1G28420 46.740 0.0 1322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso11g2106 WSD 4.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2106 - - gmx:100784945 3185.2