Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2103 ATGACAAACCCAAAAAACCAAACAACACTCTCCATCGTCATCATAGTCTACATTCTCTTCTCACTAGCAACGACGTTGGTGTCGTGTCTGAACCAAGAAGGCTTATACCTCTACCAGCTAAAACTCTCCTTAGACGACCCAGACTCGAAACTCTCCTCATGGAACTCACGAGACGCCACTCCCTGCAACTGGTACGGCGTAACCTGCGACGCCGCAACAAACACCACCGTAACGGAGTTGGACTTGTCCGACACCAACATCGGAGGCCCATTCCTCTCTAACATCTTGTGTCGTCTCCCAAACCTCGTTTCTGTGAACCTGTTCAACAACTCCATCAACGAAACCCTACCTTCAGAAATCTCCCTCTGTAAAAACCTCATCCACCTCGACCTCTCCCAGAATCTTCTCACGGGCCCACTCCCAAACACGCTCCCGCAACTTCTTAATCTCCGCTACCTCGACCTCACCGGCAACAACTTCTCCGGCCCCATCCCTGACTCATTCGGAACATTCCAGAACCTGGAAGTTCTCTCCCTCGTTTCGAATCTTCTAGAAGGCACAATCCCTTCCACCTTAGGTAATGTGAGTACTCTGAAGATGCTGAACTTAAGCTACAACCCTTTTTTCCCCGGTCGGATCCCGCCGGAGATCGGAAACCTAACGAACCTCCAAGTTCTCTGGCTAACGCAATGCAACCTCGTCGGCGTCATTCCAACCTCCCTCGGGAGGTTGGGAAAGCTACAGGATTTGGACCTCGCGCTCAACGACCTCTACGGTTCCATCCCGAGTTCGCTCACCGAGTTAACCAGCCTGAGACAGATCGAGTTGTATAACAACTCGCTCTCCGGGGAGCTTCCGAAGGGAATGGGGAACCTCACTAACTTGAGGCTCATCGATGCTTCCATGAATCACTTGACCGGAAGGATTCCGGAGGAGCTCTGTTCTCTGCCGCTGGAGAGTCTTAACCTTTACGAGAATCGCTTCGAGGGCGAGTTGCCGGCGAGCATTGCTGATTCGCCGAATTTGTATGAATTGAGGCTCTTCGGTAACCGGCTTACCGGAAAGTTACCGGAGAATCTCGGGAGAAACTCGCCGCTCCGGTGGCTTGATGTTTCGAGCAACCAGTTCTGGGGGCCAATTCCGGCGACGCTGTGTGACAAGGGGGCGCTAGAGGAGCTTCTGGTGATTTACAATCTTTTCTCCGGGGAGATTCCGGCGAGCCTCGGCACGTGCCAGAGCTTGACACGTGTGAGGCTCGGTTTTAACAGACTCTCCGGCGAGGTTCCCGCGGGGATCTGGGGGCTGCCGCACGTGTACCTGCTCGAGCTTGTTGATAACTCGTTTTCCGGTTCCATTGCGAGGACCATTGCTGGTGCTGCGAACTTGTCGCTGTTGATTTTGTCCAAGAACAACTTCACGGGAACGATTCCCGATGAGGTTGGGTGGTTGGAGAATCTCGTCGAGTTTTCAGCTAGTGATAATAAATTCACTGGTTCGCTTCCTGATAGTATTGTGAATCTTGGGCAGCTTGGGATTCTTGATTTTCATAAAAATAAGCTCTCTGGGGAGCTTCCGAAAGGGATTCGTTCTTGGAAGAAGCTCAACGATTTGAATCTGGCGAACAATGAGATTGGTGGGAGGATTCCTGATGAGATTGGGGGTTTGTCCGTGCTGAATTTTCTGGACCTTTCTAGAAACCGGTTTTTGGGGAAAGTCCCTCACGGGTTGCAGAATCTGAAGCTGAATCAGCTCAATTTGTCTTATAACCGATTATCCGGTGAATTACCTCCTTTGTTGGCTAAGGATATGTATAGGTCTAGTTTTCTAGGGAATCCTGGGCTGTGTGGGGATTTGAAGGGGTTGTGTGATGGGAGGGGTGAGGAGAAGAGTGTGGGTTATGTTTGGCTGCTTCGAACGATTTTTGTTGTTGCCACTTTGGTTTTCCTTGTTGGTGTGGTTTGGTTTTACTTTAGGTACAAGAATTTCCAGGACTCGAAGAGGGCGATCGATAAGTCGAAATGGACGTTGATGTCGTTTCATAAGCTGGGTTTTAGTGAAGATGAGATTTTGAACTGTCTTGATGAGGATAATGTGATTGGAAGCGGATCGTCCGGGAAGGTCTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTGGCTGTGAAGAAGATATGGGGAGGGGTTAAGAAGGAGGTGGAGAGTGGGGATGTTGAGAAGGGTGGTAGGGTTCAGGACAATGCTTTTGATGCTGAGGTTGAAACTTTAGGTAAAATCAGGCATAAGAACATTGTTAAGCTGTGGTGTTGCTGTACCACTAGGGATTGCAAGCTCTTGGTTTATGAATATATGCCTAATGGAAGTCTTGGTGATTTGCTTCATAGCAGTAAGGGAGGGTTGTTGGATTGGCCAACAAGGTACAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCACCATGACTGTGTTCCCGCAATTGTTCATAGAGATGTGAAATCTAACAATATTCTGTTGGACGTGGACTTTGGTGCGAGGGTGGCTGATTTTGGAGTAGCTAAGGCGGTTGAAACCACGCCCAAAGGAGCTAAATCCATGTCCGTCATTGCTGGCTCTTGTGGCTATATTGCACCAGAATATGCATATACACTTAGAGTGAACGAGAAGAGCGACATATACAGTTTCGGGGTTGTCATACTCGAGTTGGTCACTGGAAAACGCCCCGTGGACCCTGAATTTGGGGAGAAAGACTTGGTTAAGTGGGTGTGCACAACCTTGGACCAGAAAGGCGTGGACCATTTAATTGATCCAAGGCTTGATACTTGTTTCAAAGAAGAGATTTGCAAGGTCTTCAACATTGGACTCATGTGCACTAGTCCTCTTCCTATCCACCGGCCTTCAATGAGAAGAGTGGTGAAGATGTTGCAAGAGGTGGGAACAGAGAACCAAACCAAGTCTGCAAAGAAAGATGGAAAGTTATCCCCTTATTACTATGACGATGCCTCGGATCATGGAAGTGTTGTTTAA 3024 0.4901 MTNPKNQTTLSIVIIVYILFSLATTLVSCLNQEGLYLYQLKLSLDDPDSKLSSWNSRDATPCNWYGVTCDAATNTTVTELDLSDTNIGGPFLSNILCRLPNLVSVNLFNNSINETLPSEISLCKNLIHLDLSQNLLTGPLPNTLPQLLNLRYLDLTGNNFSGPIPDSFGTFQNLEVLSLVSNLLEGTIPSTLGNVSTLKMLNLSYNPFFPGRIPPEIGNLTNLQVLWLTQCNLVGVIPTSLGRLGKLQDLDLALNDLYGSIPSSLTELTSLRQIELYNNSLSGELPKGMGNLTNLRLIDASMNHLTGRIPEELCSLPLESLNLYENRFEGELPASIADSPNLYELRLFGNRLTGKLPENLGRNSPLRWLDVSSNQFWGPIPATLCDKGALEELLVIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTIAGAANLSLLILSKNNFTGTIPDEVGWLENLVEFSASDNKFTGSLPDSIVNLGQLGILDFHKNKLSGELPKGIRSWKKLNDLNLANNEIGGRIPDEIGGLSVLNFLDLSRNRFLGKVPHGLQNLKLNQLNLSYNRLSGELPPLLAKDMYRSSFLGNPGLCGDLKGLCDGRGEEKSVGYVWLLRTIFVVATLVFLVGVVWFYFRYKNFQDSKRAIDKSKWTLMSFHKLGFSEDEILNCLDEDNVIGSGSSGKVYKVVLSSGEVVAVKKIWGGVKKEVESGDVEKGGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPAIVHRDVKSNNILLDVDFGARVADFGVAKAVETTPKGAKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKRPVDPEFGEKDLVKWVCTTLDQKGVDHLIDPRLDTCFKEEICKVFNIGLMCTSPLPIHRPSMRRVVKMLQEVGTENQTKSAKKDGKLSPYYYDDASDHGSVV* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2103 1007 Pfam Leucine Rich Repeat 125 145 IPR001611 GO:0005515
Gso11g2103 1007 Pfam Leucine Rich Repeat 149 169 IPR001611 GO:0005515
Gso11g2103 1007 Gene3D Ribonuclease Inhibitor 286 388 IPR032675 -
Gso11g2103 1007 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Gso11g2103 1007 SMART serkin_6 693 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2103 1007 ProSitePatterns Protein kinases ATP-binding region signature. 699 722 IPR017441 GO:0005524
Gso11g2103 1007 PANTHER LRR RECEPTOR-LIKE KINASE 10 989 - -
Gso11g2103 1007 Gene3D Ribonuclease Inhibitor 389 622 IPR032675 -
Gso11g2103 1007 Pfam Protein kinase domain 695 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2103 1007 ProSiteProfiles Protein kinase domain profile. 693 977 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso11g2103 1007 Gene3D Transferase(Phosphotransferase) domain 1 782 1001 - -
Gso11g2103 1007 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Gso11g2103 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
Gso11g2103 1007 SUPERFAMILY L domain-like 390 615 - -
Gso11g2103 1007 Gene3D Phosphorylase Kinase; domain 1 677 781 - -
Gso11g2103 1007 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 989 - -
Gso11g2103 1007 SMART LRR_typ_2 220 244 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 268 292 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 171 195 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 555 578 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 507 531 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 99 123 IPR003591 -
Gso11g2103 1007 SMART LRR_typ_2 147 170 IPR003591 -
Gso11g2103 1007 SUPERFAMILY Protein kinase-like (PK-like) 687 974 IPR011009 -
Gso11g2103 1007 Gene3D Ribonuclease Inhibitor 187 285 IPR032675 -
Gso11g2103 1007 SUPERFAMILY RNI-like 79 427 - -
Gso11g2103 1007 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2103 Gso-Chr11 36578389 36582508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2103 27 1007 Receptor kinase-like Gene Family AT1G28440 71.631 0.0 1433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso11g2103 Pkinase 4.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2103 - - gmx:100819887 1855.88