Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2094 ATGGCTGGTCTCATCGATCTCAACAACGCCACCGAGGACGATGAAACGCCGTCGTCTGGCTCCTCCTCCTCCTCCTCCTCCTCCTCCACCGTCTGCCTTGAACTCTGGCACGCTTGCGCGGGTCCAATGATTTCATTGCCCAAGAAAGGGAGCGTTGTCGTGTACTTCCCTCAGGGACACTTGGAGCAACACCTCCACGATTTTCCGCTCCCTGCCTCTGCCAACATCCCTTCCCATGTCTTCTGTCGCGTCCTCGATGTCAAGCTTCATGCTGAGGAAGGGAGTGATGAAGTTTATTGCCAGGTGGTGCTGGTTCCCGAAAGTGAGCAAGTGCAGCAGAAGTTGCGGGAGGGGGAATTTGATGCTGATGGTGAAGAGGAAGATGCTGAAGCTGTGATGAAGTCGACGACGCCCCACATGTTCTGCAAGACTTTGACTGCTTCTGATACCAGCACTCATGGTGGATTCTCTGTGCCTCGTCGCGCCGCGGAAGATTGCTTCCCTCCCCTGGATTACAGTCAACAGAGGCCTTCACAGGAGCTTGTGGCAAAGGATCTCCATGGCCAGGAATGGAGGTTTCGACATATATATAGGGGGCAGCCGCGAAGACACCTGCTTACTACTGGTTGGAGTGCCTTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTCAGGGGTGAGGATGGAGAACTGAGATTGGGAATTCGTAGGGCTGCTCAACTGAAAAGTGGCAGTACCTTTTCAGCTCTTTCTGGCCAGCAAGGGAGTCCTACCAGTCTTATGGATGTGGTTAATGCTTTGTCTGCAAGATGTGCCTTTAGCATTCACTATAATCCGAGGGTCAGTTCATCTGAGTTCATCATACCTATCCACAGATTCGTAAAGAGCCTTGATTATTCTTATTCAGCTGGAATGAGGTTCAGGATGCGCTTTGAAACTGAGGATGCTGCAGAGCGAAGATTCACAGGATTAATTGTTGGAATTGCTGATGTGGATCCTGTTAGATGGCCTGGATCTAGATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCTACTGCAAATAACTTGATGTCAGCTGGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGATTTTCCAGTTTCCAATGTGATTGGAACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATGTTGGGTGTTAATACTACTTATGATAGTTTTAATGCTCAAAGTCACCAGCTATCTGATTTGAGGAGGTGCTATCCTGGCTCGAACTATCCTAGGATTGCTGCAACAGGAAATAGCATTGGAATCTCACAAGTGAGTTCCAATGTTTCCAACAACGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCTAGCCAACCATATGGAAGGGCCCTGTCTGTTGACGAGGCTTGTGGAAATGGTCGCTTTGGACTTTTTGATGGTTTCCAGGCGATGAGATCCAGAAATGGATGGTCTTCCCATGTGAGCAACAATTCCTCACATTTGCATCCTCCTGTTCCATCTGGGCAAGTTTCATCTCCGTCATCTGTGTTCATGTTCCAGCAAGCTGTCAATCCAGTTTTAAACTCGGATTATAACAACCAAATAGGTCAGGTGATGGGAGATAAAGTCCATCAGCGAGTTTCATATGCGTCTGAAGTTAAAGGCGGAAAATTTGTATCAACCCCCTATGAGCCTCTTCTCCGTGGACTATCTCAGGAAGGCACAAATTCTTTTGGTCTTTCAAACTTTCATAATCAGCTGGATAGTTCACGTTCACACGATTCTGTTTCAGTACTGAGAGCTAGTCAAGAGTTGGTTCCCTCGTGTAAAAGTAGATGCAGAGTCTTTGGATTTTCATTAACTGAGGGTGCTCCTGTTGCAAGTAAAGAGGCGACTGACTCATCTGCAGTTGCTTGTGCTGGACCTTCCTTTACAAGACATGTTGAAGATGATTTCCATCCAGGGCATTCACTTAGGAGCAAGGCAGTGGCAAGTTATTGCACCAAGGGTGTGCTGCAATATTGA 2148 0.4735 MAGLIDLNNATEDDETPSSGSSSSSSSSSTVCLELWHACAGPMISLPKKGSVVVYFPQGHLEQHLHDFPLPASANIPSHVFCRVLDVKLHAEEGSDEVYCQVVLVPESEQVQQKLREGEFDADGEEEDAEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQGSPTSLMDVVNALSARCAFSIHYNPRVSSSEFIIPIHRFVKSLDYSYSAGMRFRMRFETEDAAERRFTGLIVGIADVDPVRWPGSRWRCLMVRWDDLEATRHNRVSPWEIEPSGSASTANNLMSAGLKRTKIGLPSAKLDFPVSNVIGTSDFGESLRFQKVLQGQEMLGVNTTYDSFNAQSHQLSDLRRCYPGSNYPRIAATGNSIGISQVSSNVSNNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGLFDGFQAMRSRNGWSSHVSNNSSHLHPPVPSGQVSSPSSVFMFQQAVNPVLNSDYNNQIGQVMGDKVHQRVSYASEVKGGKFVSTPYEPLLRGLSQEGTNSFGLSNFHNQLDSSRSHDSVSVLRASQELVPSCKSRCRVFGFSLTEGAPVASKEATDSSAVACAGPSFTRHVEDDFHPGHSLRSKAVASYCTKGVLQY* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2094 715 SMART B3_2 141 243 IPR003340 GO:0003677
Gso11g2094 715 Pfam Auxin response factor 268 348 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gso11g2094 715 Gene3D - 139 243 IPR015300 -
Gso11g2094 715 CDD B3_DNA 139 241 IPR003340 GO:0003677
Gso11g2094 715 ProSiteProfiles B3 DNA-binding domain profile. 141 243 IPR003340 GO:0003677
Gso11g2094 715 Gene3D - 304 378 - -
Gso11g2094 715 MobiDBLite consensus disorder prediction 1 27 - -
Gso11g2094 715 PANTHER AUXIN RESPONSE FACTOR 21 715 - -
Gso11g2094 715 MobiDBLite consensus disorder prediction 11 27 - -
Gso11g2094 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 715 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gso11g2094 715 SUPERFAMILY DNA-binding pseudobarrel domain 134 254 IPR015300 -
Gso11g2094 715 Pfam B3 DNA binding domain 141 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2094 Gso-Chr11 36442227 36448208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2094 27 495 B3 DNA Binding Superfamily AT5G60450 49.476 8.10e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gso11g2094 B3 8.9e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2094 K14486 - gmx:100808119 1395.56