Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g2082 ATGTCTTCTTCCAACAGACATTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATAATCCCCACAACCAATGGCATCATGACATCAACTCCTCTATAGTTTCCACCGGTTGCCAAAGAAGCCCTTATGCTAATTCAGGAGGTGACGAGAGAACCCCAGAACCAAAGCCAAGATGGAACCCAAAACCGGAGCAAATCCGCATCCTGGAAGCCATCTTCAACTCAGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAAGAGTATGGCCAAGTGGGTGATGCCAATGTCTTCTACTGGTTCCAGAACCGCAAATCCAGGAGCAAGCACAAGCTTCGTCACTTCCAAAACACAAAGAACCAAAATAATGCAGAAGCACAACAACAGCACAGGGTTGATGCTTCTTCTTCTCTCTCTCAGACCACACCACTTTCATCCTCATCCTCTTCATCTGACAAATCATCTTCAAAGGAATTAGCATACAACCCCAATGGATTCTCCTTTGGCTTTTCAAATGTCAATGATGTAGCAGTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTTCACCCTCACAACCACAGTGACAACAATTTGCTACCACAAGAGCCTTTCTCCTTTACCATGCACAACAACAATGGGCAAGGTTTTGTTGATAATAATACCATAACAACGCTTGGGTTTTCTGTCCCTCAATTCTCCAGCAACATGATGCAATCTCAACTTCAGTGTCAACAAAATGTTGGATCTTGCACTAGTCTTTTGCTGAGTGAGATCATGAGTCATGGAACCTTCTCAAAGAAAGATCAAGACAAGGCATTGAAGATAATGCATCCACAACTTAGTAATTTCCCTCTTACTTCAACTCCAACCACAATCATTGCTCCTCCAATCTCAACCGTTCTGGATCCAAGCCCCATCACTCAACTTGAAGGTGTTGGTGAGGTTGCAGCAGGAGATAGGGCAAAATGTATTACAGTGTTCATTAACGATGTTGTATTTGAGATTGTGATGGGACCCTTCAACGTGCGCCAAGCCTTTGGAGATGAAGCTGTGCTTATCCACTCTTCTGGTAACCCTGTTCCCACCGATGAGTGGGGCATCACTCTCCACCCACTGCACCATGGTGCTTGTTACTATCTGGTTTAA 1170 0.4496 MSSSNRHWPSMFKSKPCNNPHNQWHHDINSSIVSTGCQRSPYANSGGDERTPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHKLRHFQNTKNQNNAEAQQQHRVDASSSLSQTTPLSSSSSSSDKSSSKELAYNPNGFSFGFSNVNDVAVPNSPTASVNQTYFHPHNHSDNNLLPQEPFSFTMHNNNGQGFVDNNTITTLGFSVPQFSSNMMQSQLQCQQNVGSCTSLLLSEIMSHGTFSKKDQDKALKIMHPQLSNFPLTSTPTTIIAPPISTVLDPSPITQLEGVGEVAAGDRAKCITVFINDVVFEIVMGPFNVRQAFGDEAVLIHSSGNPVPTDEWGITLHPLHHGACYYLV* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g2082 389 SMART HOX_1 53 120 IPR001356 GO:0003677
Gso11g2082 389 ProSiteProfiles 'Homeobox' domain profile. 51 116 IPR001356 GO:0003677
Gso11g2082 389 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 389 - -
Gso11g2082 389 SUPERFAMILY Homeodomain-like 48 120 IPR009057 -
Gso11g2082 389 MobiDBLite consensus disorder prediction 1 62 - -
Gso11g2082 389 Gene3D - 55 125 - -
Gso11g2082 389 Pfam Homeodomain 55 115 IPR001356 GO:0003677
Gso11g2082 389 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 389 IPR044557 GO:0003700|GO:0050793
Gso11g2082 389 CDD homeodomain 54 116 IPR001356 GO:0003677
Gso11g2082 389 MobiDBLite consensus disorder prediction 124 163 - -
Gso11g2082 389 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g2082 Gso-Chr11 36310215 36313679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g2082 1 389 Wox Gene Family AT2G33880 42.757 3.23e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Gso11g2082 Homeodomain 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g2082 - - gmx:100778000 764.992